Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181296g00004 ATGGACACTTCTTGGTTCCCTCAACTCACTTATTGGGACCATGTCTCTAGAAAGCTAGGAGAGCTTGGATTTAAGAAGAGTGGTGACAAATGTAAGGAGAAATTCGAAGATGAGACAAGATATTTCAACAACTACGCCAAGAACAATAGTTACAGGTTTCTTAATGAGCTTGAAGATCTTTATCAAGGTGATAATCATAATCAAAGCTCTATAGTAGATAACCATCAAGATCATCTTGTGACTGAAAATACCCAAGATTTTGAACACCAAATTAATGCCGGAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGGTTCAAGAGATGACAAGTCAGTGAAAGAACAAGAATGTGAAGAAGAGAATAAGAGTGATGAGAAGAAGATGAGAAGCAGGAAGAGGAAGAAGCGTTGCAGGTTTGAGAGGTTGAAGGGTTTCTGTGAGAGTATTGTGAATAACATGATGGCTCAGCAAGAAGAGATACACAACAAGCTGATTCAAGACATGCTGAGAAGAGATGAAGAGAAGCTTCAAAGAGAGGAAGAATGGAAGAAGCAAGAGACTGAAAGGATGAACAAGGAGCTCCAGATTATGGCCCAAGAACAAGCCATTGCAGGTGACAGGCAAGCCTCCATCATCCAATTCTTGAAGAAATACGCATCAACAAGCCCTAATGATAATCCTTCTTCTGACGGAATTATTCCAACTCATCAAATTCAAAACCCTAGCTCCATAGTAAGTGACACATTATTACAAGTACCTTCTTCTTCCAACAACACTACTACTACTAGTTCTTCCTCCCTCAACCGCCAAGATCATATTATTCCACCTGAGGAGCAGTCAAATTCAATCTCAACCGTTAATAATGATGCTGGGAGAAGATGGCCAAGAGATGAAGTTATGGCTCTGATAAACCTTAGATGTGAGAGTCTTAATAATAAGAATGGTGAAGAGAGGGAAATTGGGAACAATAATAACAATAAGGTTCCTTTATGGGAGAGAATCTCACAAGGGATGTCAGATTTGGGATACAAGAGAAGTGCAAAGAGATGCAAAGAGAAATGGGAGAACATAAACAAGTACTTCAGAAAAACCAAGGATGTTAATAAGAAAAGGTCCATTGATTCAAGGACTTGTCCCTACTTCCATCAACTCAAGACTCTCTATGATCAAGGAAGGCTTGTTCATCAACCGGAGACCATGCCGGAAAGCCACCACGCCGACCAAGTGGTGGTTCCTCCGGTGAGGTCTACTGGTGGTGGTGGTGGTGCACCATTGAATTTTGGTTAG 1299 0.4095 MDTSWFPQLTYWDHVSRKLGELGFKKSGDKCKEKFEDETRYFNNYAKNNSYRFLNELEDLYQGDNHNQSSIVDNHQDHLVTENTQDFEHQINAGDEEEEEEEEEEEEEGSRDDKSVKEQECEEENKSDEKKMRSRKRKKRCRFERLKGFCESIVNNMMAQQEEIHNKLIQDMLRRDEEKLQREEEWKKQETERMNKELQIMAQEQAIAGDRQASIIQFLKKYASTSPNDNPSSDGIIPTHQIQNPSSIVSDTLLQVPSSSNNTTTTSSSSLNRQDHIIPPEEQSNSISTVNNDAGRRWPRDEVMALINLRCESLNNKNGEEREIGNNNNNKVPLWERISQGMSDLGYKRSAKRCKEKWENINKYFRKTKDVNKKRSIDSRTCPYFHQLKTLYDQGRLVHQPETMPESHHADQVVVPPVRSTGGGGGAPLNFG 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181296g00004 432 MobiDBLite consensus disorder prediction 93 109 - -
Stsc181296g00004 432 Gene3D - 8 44 - -
Stsc181296g00004 432 Gene3D - 298 367 - -
Stsc181296g00004 432 MobiDBLite consensus disorder prediction 93 135 - -
Stsc181296g00004 432 ProSiteProfiles Myb-like domain profile. 297 362 IPR001005 -
Stsc181296g00004 432 MobiDBLite consensus disorder prediction 256 275 - -
Stsc181296g00004 432 CDD GT1 296 369 - -
Stsc181296g00004 432 MobiDBLite consensus disorder prediction 110 131 - -
Stsc181296g00004 432 Pfam Myb/SANT-like DNA-binding domain 296 390 IPR044822 -
Stsc181296g00004 432 PANTHER FI21293P1 1 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181296g00004 Stsc-Chr181296 22520 24362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181296g00004 5 394 Trihelix Transcription Factor Family AT5G28300 42.921 1.57e-84 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc181296g00004 Myb_DNA-bind_4 1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181296g00004 - - aip:107645832 590.882