Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181295g00003 ATGGTTGCTGGGAAAAGATACTTGGGTGCTACTGTGGATGAGGAGGAAAAGGCGAAGAAGTGTTTAAAAGTCATAGATGATTTTATGTATCATTTGGGATTATCTACTGTGGGAGATGCTATTCCTGCGCTAAGGTGGATGGATTTTGGAGGCAATGAGAGAGCCATGAAAAAGATTGCTAAGGAATTCGACCATGTTTTGAATGAATGGTTAGAGGAGCATAAAACAGGTCTCAGTGCAAAGGCTACCAATGAACGAGACTTCATGGATGTTATGATTTCTATTCTCGGAGATACAGAGATTCATGGGTTTGATGCTGATACCGTAATCAAAGCCACAGCAATGGCAATGATCCTAGGAGGAACTAGTTCAACTAGTGTTACACTTACCTGGGCATTATGTTTGTTATTAAATAATCCTCGTACATTAAAAAAAGTAACAGAAGAACTTAATAGTCAAGTCGGAAAAAAAAAATGCATAGAAGAGTCAGATTTAAGCAAATTAGTATATCTTGAAGCTGTAGTGAAAGAGACGTTAAGACTATATCCAGCAGGTCCTCTTGGAGCACCGCGTGAATTTACAGAGAATTGCATTTTAGGTGACTATCATATCAAAAAAGGATCTCGACTAATTATAAATATATGGAAGATTCAAACTGATCCTAGTGTTTGGTCAGATCCTTTAGAATTCAAACCAGAAAGGTTCCTCACAACTCATAAAAACATTGAAGTTAAAGGTCAACATTTCGAGCTCATACCATTTGGAAGTGGTAGAAGGATGTGTCCTGCAGCGTCATTTTCCCTTCAAATGGTTCAGTTTGCTTTGGCTAGATTCTTGCACTCATTTGAAATTTCAAAACCATCTTCTGATGAACCAATTGATATGACTGGTATCCTTGGAATGTCCTATACCAAAGCTACTCCACTTGAGATTCTGATCAAGCCATGTAATCTTTGA 957 0.3793 MVAGKRYLGATVDEEEKAKKCLKVIDDFMYHLGLSTVGDAIPALRWMDFGGNERAMKKIAKEFDHVLNEWLEEHKTGLSAKATNERDFMDVMISILGDTEIHGFDADTVIKATAMAMILGGTSSTSVTLTWALCLLLNNPRTLKKVTEELNSQVGKKKCIEESDLSKLVYLEAVVKETLRLYPAGPLGAPREFTENCILGDYHIKKGSRLIINIWKIQTDPSVWSDPLEFKPERFLTTHKNIEVKGQHFELIPFGSGRRMCPAASFSLQMVQFALARFLHSFEISKPSSDEPIDMTGILGMSYTKATPLEILIKPCNL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181295g00003 318 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 254 263 IPR017972 GO:0005506|GO:0016705
Stsc181295g00003 318 Pfam Cytochrome P450 13 296 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181295g00003 318 SUPERFAMILY Cytochrome P450 15 315 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181295g00003 318 PRINTS E-class P450 group I signature 172 190 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181295g00003 318 PRINTS E-class P450 group I signature 251 261 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181295g00003 318 PRINTS E-class P450 group I signature 213 237 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181295g00003 318 PRINTS E-class P450 group I signature 129 155 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181295g00003 318 PRINTS E-class P450 group I signature 109 126 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181295g00003 318 PRINTS E-class P450 group I signature 261 284 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181295g00003 318 PRINTS P450 superfamily signature 252 261 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181295g00003 318 PRINTS P450 superfamily signature 120 137 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181295g00003 318 PRINTS P450 superfamily signature 173 184 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181295g00003 318 FunFam Uncharacterized protein 56 317 - -
Stsc181295g00003 318 Gene3D Cytochrome P450 1 315 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181295g00003 318 PANTHER CYTOCHROME P450 82C3-RELATED 1 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181295g00003 Stsc-Chr181295 16086 17991 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181295g00003 1 315 Cytochrome P450 AT4G31940 47.840 8.97e-108 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181295g00003 - - aip:107643961 507.294