Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181294g00011 ATGGCACCAAATCCAAATGTGAAAGCAGCCTTTCGAGCGATGGCAGCTCTTGGGATTTCTGAATCACAAGTGAAACCGGTACTAAAGAAGCTTCTTAAATTGTATGATAAAAATTGGGCACTTATTGAAGAAGAGAACTATAGAGCTCTGGCAGATGCCATATTTGAGGATGTAGAAAATCAGGTTCCAGACCCAAAAAAGGTTCCAGAACAGAAAAAGAAAAAGAAGAATGTTCATGAGGAAGAGATGGAGTACGAAGAAGAAGCTGAGATGAATTTGGAGTTATGCCGACCTTTGAAGAGGGTGCGTCTAAGAGGCCAAGAGAGTCAGTCTTTGCATCCTACGACTAGCTGTTCCCCCACACTTGCCACCTCCCCATCAAAACAATCCGAAGTGCACCCAAGTCCAGCGCAGGATGTTATTGTTGACAAGGGTAAACAACCTGTGTCACCCCAACTTAATCCCAGAAGAAGGAGATTGATATCTGAATCTGAAAGAGCCTCCCGATCAGTCCCATCTAAAGAACCAACAGCCAAACCAGAGCCATCAAGTGTTGGGGGCTCATCAATGAAGAAGAATGCAGCTGGAAAGCAAAATGGTCATTCCAATATGGCATCATCACAATGCAGAGCTGGAGATATGCTTCCTTACTCAAATGAAAGAGCTACATCTAGCATAGAGATAGCCTCATCTACCAAGGGAGAGGTGAAAATTTCTGTGAGCTGCAGTTCAGCTGTTGGGGGATCAGATTTTCATATGCCTAGTCGAGATCAAATTCTAAAAATGATGGAGGATAAATGTCTGCATTCATATAAAATCACTGACCCAAATTTTTCTGTTCCGGAACTGTTGAAAGATATATGTGACTGCGTCCTGGAATTCAAAATCCATTCAGATGATTCCCGGAAAGTAGCTCTCATAACATCAAGGGATGATATCTTGAAGGAATCTGAGACACATGGCACACTGAGTGTCACAGGAAATAAGGATTTGGATGCACTTTCTCTTCCACCAAATGGAACAATCCATGTTGAGTCTTCTGCCACCGTGCTCTCTCCCCGAAGTCCCTTTTCTCTTGCCAACCGCACTGGTCAGGTTGATGCTGCACTGGTTTCCAGGGATGCTATACATTATTTGTCAGAAAATGACGATGGAATGGAGTTGGAGGATCCTACTTCCTCAAATTCGCGCAGTTTAGTGGTTGTTCCACATAGTGAACTTACAGCTGATGATATACGGTCATTTCATGATGTTAATGACCTTACAAAAGCAGAGGAAAATGTTCAAATTTCATGGGTCAATGAAGTTACTAATGAGTTCCTGCCTCCTTTTCACTACATACCCCAAAATCTTGTGTTCCAAAATGCTTCTGTGAACATTTTGCTATCTCGTATTGTGGATGAGGACTGTTGCTCATCTTGTATGGGCAATTGTGTCTCATCACCTACACCCTGTGCTTGTGCAAACAAAAATGGAGGGGAATTTGCATATAATGCTCGAGGCCTCTTGAAGGAAGGCTTTTTGGAAGGGTGCCTTGCCATCAGCCGTAACCCTAAACGATATTACATCTATTGCAAAGACTGCCCCCTTGAAAGATCTAAGAATGATGGTTGTTTAGAACCATGTAAAGGACACTTGAAGAGGAAGTTTATCAAAGAATGTTGGAGCAAATGTGGTTGTGGGAAACAGTGTGGCAATCGGATCGTTCAGCGTGGAATAACTTGCAACCTGCAGGTATTTTTCACTCCGGAAGGAAAAGGTTGGGGTCTTCGTACCTTAGAAGAGTTGCCAAGAGGTGCATTTGTGTGCGAGTTTGTTGGAGAGATATTAACCGTAAAAGAGTTGCAAGAGAGGAACATGAAATGTGCTGTAAATGGGGGTTATACGTACCCTGTTCTACTGGATGCAAATTGGGGTTTGAGATCTGTAAAGGATGAAGAAGCTCTATGCTTGGATGCTGCTTCCTTTGGTAATGCTGCTAGGTTTATCAATCACAGATGTTATGATTCTAACTTGGTTGAGATTCCAGTTGAAATTGAAGGCCCAGATCGTCACTACTATCATTTTGCCTTGTTCACTTGTAGAAAAGTAGCAGCAAACGAAGAGCTTACCTGGGACTATGGTATTGACTTTGATGGCCGTGATAATCCTATCAAGCTGTTCCAGTGCAAATGTGGAAGTAAATTCTGTAGGCATATGAAGCGAACAGATAGGTCAGTGAGATCTTCACCATCAAATGCAAGATAA 2247 0.4263 MAPNPNVKAAFRAMAALGISESQVKPVLKKLLKLYDKNWALIEEENYRALADAIFEDVENQVPDPKKVPEQKKKKKNVHEEEMEYEEEAEMNLELCRPLKRVRLRGQESQSLHPTTSCSPTLATSPSKQSEVHPSPAQDVIVDKGKQPVSPQLNPRRRRLISESERASRSVPSKEPTAKPEPSSVGGSSMKKNAAGKQNGHSNMASSQCRAGDMLPYSNERATSSIEIASSTKGEVKISVSCSSAVGGSDFHMPSRDQILKMMEDKCLHSYKITDPNFSVPELLKDICDCVLEFKIHSDDSRKVALITSRDDILKESETHGTLSVTGNKDLDALSLPPNGTIHVESSATVLSPRSPFSLANRTGQVDAALVSRDAIHYLSENDDGMELEDPTSSNSRSLVVVPHSELTADDIRSFHDVNDLTKAEENVQISWVNEVTNEFLPPFHYIPQNLVFQNASVNILLSRIVDEDCCSSCMGNCVSSPTPCACANKNGGEFAYNARGLLKEGFLEGCLAISRNPKRYYIYCKDCPLERSKNDGCLEPCKGHLKRKFIKECWSKCGCGKQCGNRIVQRGITCNLQVFFTPEGKGWGLRTLEELPRGAFVCEFVGEILTVKELQERNMKCAVNGGYTYPVLLDANWGLRSVKDEEALCLDAASFGNAARFINHRCYDSNLVEIPVEIEGPDRHYYHFALFTCRKVAANEELTWDYGIDFDGRDNPIKLFQCKCGSKFCRHMKRTDRSVRSSPSNAR 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181294g00011 748 MobiDBLite consensus disorder prediction 158 172 - -
Stsc181294g00011 748 SMART preset_2 418 559 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc181294g00011 748 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 747 IPR025776 -
Stsc181294g00011 748 MobiDBLite consensus disorder prediction 106 209 - -
Stsc181294g00011 748 Pfam Ubiquitin-binding WIYLD domain 7 59 IPR018848 -
Stsc181294g00011 748 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 742 - -
Stsc181294g00011 748 MobiDBLite consensus disorder prediction 63 83 - -
Stsc181294g00011 748 Gene3D SET domain 421 733 IPR046341 -
Stsc181294g00011 748 MobiDBLite consensus disorder prediction 182 209 - -
Stsc181294g00011 748 Pfam Pre-SET motif 422 567 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc181294g00011 748 ProSiteProfiles SET domain profile. 575 708 IPR001214 GO:0005515
Stsc181294g00011 748 CDD SET_SETDB-like 442 708 - -
Stsc181294g00011 748 Pfam SET domain 587 708 IPR001214 GO:0005515
Stsc181294g00011 748 MobiDBLite consensus disorder prediction 63 82 - -
Stsc181294g00011 748 SUPERFAMILY SET domain 427 731 IPR046341 -
Stsc181294g00011 748 ProSiteProfiles Pre-SET domain profile. 470 572 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc181294g00011 748 MobiDBLite consensus disorder prediction 108 134 - -
Stsc181294g00011 748 Gene3D - 1 60 IPR043017 -
Stsc181294g00011 748 SMART set_7 575 714 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181294g00011 Stsc-Chr181294 102991 110361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181294g00011 551 708 C2H2 Transcription Factor Family AT2G23740 41.875 1.99e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc181294g00011 Pre-SET 1.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181294g00011 - - gmx:100778335 911.368