Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181294g00002 ATGCAGGGTGTTACTATTATTCCTACTAGTGGTGGTGGTGGTGAATCTACCATGTCTTCTACTTTGTCAAAAGAAGACACAAACTTGGTTCTTTCTTCTGAGGACTCTTCTTGCCCTGAAGATTCTGAGTTGCTTGAACTTGGTCTTGGATTAGGCCTATCTCATAAACCTGCTCCTAAATCACACACTCATCATCACCATCATAATCATCACCATGCTAGAATTTTGACGGCTAAGGATTTTCCTTCTTCTGCTTCAGCTTCTTCATCATCTTCATCTTCTTCTTCTCCTGCTTCTTCTTTGAGCAGGGCCAATAACAATACCACCATCACTTCTGGCACCAAGAGAACTGCTGATTCTGTTGCTGCTGCTGCTAATGGACCTAGTCAGGTAGTTGGATGGCCTCCCCTCGGAATACACAGAGCGAAGAGCATTAATTCAAAATCGCCAGCTACTGAGGTGTTCAACTTGAGTTCCGGGAAGAGTAAGAGTGGCAAAACTGACGTGCTAAGGAAGAGTGCTGATAAAACCGATGGTAATAACGACAACATTGATACCAATGAAAAAAGAAACATCCGGAGTTCCCTGTTTGTCAAGGTAAATATGGACGGGATAGCGATTGGAAGGAAGGTCGATTTGGGTGTCCATACTTCCTATGAAACCTTAGCTCAAACATTGGAGGATATGTTTAGAGAATCAACTGCAGCCATCACTTTCAATGGATCAAACGGTGAAGACTATGGTATTCTTGTTGGAGGAGATCAACACTCGAAATATCTAGATGGATCTTCAAAGTTTGTGCTTACATACGAAGACAAGGATGGAGATTGGATGCTTGTTGGAGATGTTCCTTGGGAGATGTTCATTAACTCAGTGAGGAGGCTAAGAATCATGAGAACATCTGAGGCCAATGGAAATGGACTTGCACCAATATTGGAAGAAAAGAACTGCAGACAGAAAAGCAAGCCCATATAG 975 0.4267 MQGVTIIPTSGGGGESTMSSTLSKEDTNLVLSSEDSSCPEDSELLELGLGLGLSHKPAPKSHTHHHHHNHHHARILTAKDFPSSASASSSSSSSSSPASSLSRANNNTTITSGTKRTADSVAAAANGPSQVVGWPPLGIHRAKSINSKSPATEVFNLSSGKSKSGKTDVLRKSADKTDGNNDNIDTNEKRNIRSSLFVKVNMDGIAIGRKVDLGVHTSYETLAQTLEDMFRESTAAITFNGSNGEDYGILVGGDQHSKYLDGSSKFVLTYEDKDGDWMLVGDVPWEMFINSVRRLRIMRTSEANGNGLAPILEEKNCRQKSKPI 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181294g00002 324 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 45 304 IPR003311 GO:0005634|GO:0006355
Stsc181294g00002 324 MobiDBLite consensus disorder prediction 165 187 - -
Stsc181294g00002 324 Pfam AUX/IAA family 46 305 IPR033389 -
Stsc181294g00002 324 MobiDBLite consensus disorder prediction 1 38 - -
Stsc181294g00002 324 Gene3D - 190 309 - -
Stsc181294g00002 324 ProSiteProfiles PB1 domain profile. 195 302 IPR000270 GO:0005515
Stsc181294g00002 324 MobiDBLite consensus disorder prediction 1 135 - -
Stsc181294g00002 324 MobiDBLite consensus disorder prediction 58 74 - -
Stsc181294g00002 324 FunFam Auxin-responsive protein 190 310 - -
Stsc181294g00002 324 SUPERFAMILY CAD & PB1 domains 189 298 - -
Stsc181294g00002 324 MobiDBLite consensus disorder prediction 155 187 - -
Stsc181294g00002 324 MobiDBLite consensus disorder prediction 81 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181294g00002 Stsc-Chr181294 21157 24756 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181294g00002 166 303 B3 DNA Binding Superfamily AT1G59750 28.986 9.65e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc181294g00002 AUX_IAA 3e-56 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181294g00002 K14484 - gmx:100527033 332.413