Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181293g00014 ATGGATCGGGAGTGGGGTTCGAAGCCAGGGAGCGGCGGCGCCGCCTCCGCTCAGAACGAAGCCATCGACCGGCGGGAGCGTCTCCGGCGGCTTGCTCTCGAGACAATTGATCTCGCCAAGGATCCTTATTTCATGCGCAATCACCTTGGAAGCTATGAATGCAAGCTTTGCTTGACTTTGCACAACAATGAAGGGNNNNNNNNNNATTTGGCGAAGCGTGCTGCTCGTGAGGCTAAAGATGCTCCAGCTCAACCTCAACCTCACAAGCGCAAAGTTTCCGTTCGCAAAACAGTCAAGATTGGTCGGCCTGGATATCGAGTGACAAAGCAATATGATCCGGAGACAAAGCAACGATCTCTGCTTTTCCAGATTGAATATCCTGAGATTGAAGATCTAATGAAGCCAAGACATCGATTTATGTCTTCTTATGAACAGAGGGTGCAACCATTTGATAAAAGATATCAATATCTTTTGTTTGCCGCTGAACCATATGAAATCATTGCTTTCAAGGTCCCTAGCACGGAGATTGACAAATCTACACCAAAATTTTTCTCACACTGGGACCCAGATTCAAAGATGTTCACGCTACAATTGTATTTTAAATCCAAGCCACCAGAAGCCAACAAACCACAACCCCCATCTACAGCCAATGGTACAGCAGCACCTGGTGTTCCACCAAGACCCATGCCCCCGCCACCTCAAGCTCCACCACCACCACCTCCTCCTCCACAAGGGCTACCTCCTGGTGCACCTATCGGAAATCCTCCTAGAGCGCCTCCACCTCCGATGCCGGGATCATTGCCACCTCCTCCTCCGATGGCAAATGGTCCTAGACCTGCACCTCCTGGTGGAATGCCATCTATCCCACCCCCTCCCCCAGTTGGCAGCGGCACATCAGCTGGTTTTAACATGGGTTCTAGGCCGCCGTCAATGCCACCACCACCCCAAGGTTTCCCATCCCAACAAATGCAGAATCAGGGTGTACGACTGCCTCCGCCTCCCCCTAACATGGGACAGTAG 1020 0.5127 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGXXXXLAKRAAREAKDAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQYDPETKQRSLLFQIEYPEIEDLMKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPPEANKPQPPSTANGTAAPGVPPRPMPPPPQAPPPPPPPPQGLPPGAPIGNPPRAPPPPMPGSLPPPPPMANGPRPAPPGGMPSIPPPPPVGSGTSAGFNMGSRPPSMPPPPQGFPSQQMQNQGVRLPPPPPNMGQ 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181293g00014 339 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 100 194 IPR031781 -
Stsc181293g00014 339 PRINTS Proline rich extensin signature 226 242 - -
Stsc181293g00014 339 PRINTS Proline rich extensin signature 243 260 - -
Stsc181293g00014 339 PRINTS Proline rich extensin signature 261 286 - -
Stsc181293g00014 339 PRINTS Proline rich extensin signature 201 222 - -
Stsc181293g00014 339 MobiDBLite consensus disorder prediction 1 23 - -
Stsc181293g00014 339 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 251 - -
Stsc181293g00014 339 SMART CactinC_cactus_3 79 207 - -
Stsc181293g00014 339 MobiDBLite consensus disorder prediction 198 339 - -
Stsc181293g00014 339 MobiDBLite consensus disorder prediction 223 296 - -
Stsc181293g00014 339 FunFam Splicing factor 3a subunit 2 84 208 - -
Stsc181293g00014 339 Gene3D - 84 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181293g00014 Stsc-Chr181293 55562 59424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181293g00014 1 218 C2H2 Transcription Factor Family AT2G32600 83.772 4.66e-129 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181293g00014 K12826 - gmx:100818114 412.92