Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181292g00013 ATGGATAATAACCGGTTTTTATCACAGAAATACACAGCCAAGAGTGGTTATGAACCCTCAGACACAGAGACAGAGTGGCAAGAGGTTCCAAGACATGAACGAGAAAGAAAGAACATTGCCTTGGATCATCAAGATGCAAAAGCTTTCAATCTAGTTTCCAAGAGTCCATTGGCACTTCACAGGAGGCACCAGTACAACCATTCCAAGTTTGAAACTGAAATCTCATCACCAACCCAACCAAGAAGAAGACAACACCTTAGCAAGTCACCCTATAAGCTTCGCATAGCTGGCGATGATGACGGCTGCAATGCTGATGATCATGTTCCCTCTCCATCACCCATAAGAGGTTTGAACACAAGGAGGAATATAAGCCCTTTGCCAAAACCAGATGTTGGGAGAACGGTGTCTCCTTACAGCAGAAAGCATCATGTTGATGTGGAAAGAGTGGTTGATAAGCAAAACTATAAAAGATCAGTGACAGCACCAAGGTTGAGGGAACAACAGAGAAGAACTCCCTCACCAATGGCCATAGGCAGGGTTCTCAATCCACCTTCAGTGGGAGAGATCAATGAAATCATAGCAGAGGTGAAACTATCTGATGATCCTAACACTTTGGATGAGTCAATGACTTCCACCACAACTGAGTCAATTCAACCTGGTGATCTCTTCTTCTCTCGCGAAAGCAGTGCCTTGCAAGGCAAGAAACCTTCTTTGCTTCCCCAGAAACTTCAACAATATGGATATTATAGCCCAAATCCTGCAGCTGCTGCCATGAATCCCCACATTAGAGGCCTCCCTGCTTCTTCCCTTGAGGATGAAAGCAACGGAGATGGCATGAACATCCGAGGAAAGGGTGGTAGCAGTATGACGAGTGATGGAAGTGTGAAGACAACTGATAGCATGAGGAAATTTACAGCTAACAGGAAGAAGAGCCAGAAGGATGCATCATGGTTTGCTTGCATGAGGACAGGAAACTGCAGGACTTCAATGAAATCGCCCGAGCGTAAGAGGCCAATTGAGGCTTCTTTCATTGGCAGGGCTAATGTGGTGGAAACCCTCCCACAATTCTGGGCTGATAAGCACCAACCTGCTTCACTTAATGGATTCATTTGCAACAAACAAGAAGCTCAACTTCTCAAGGAACTAATGTCTGAGGGATCTTGCCCTCATATTCTGCTCAAAGGACCCTCCGGTTCTGGGAAAAGAGAACTAGCAATGGCTCTTCTACGCGAAATATATGGTGATGCATGTTGCAATATGTCCCATGAGTTAAGGAGCTTCCCTATTCAGGACAAGAGGCCTATCAAAGTATGTGTTTCAATAGCATCTAGTGCTCATCACATGGAGCTCAATGTAAGCATGGAACCAAATGCTAAATATGCTTTGCTGGGATTAATCAAAGAAATTAGCAATATATATGCAATGACACCCGAAGTCAGCAATGTTAATTTCAAGCCTGATTATAAAGTAATACTTCTTTATGGCGTTGATAAAGCAGTGGAGAACATCCAGCACATGATCAAATGGATTATAGACCGATATTCGGATATATGCAAATTAGTTCTCTGCTGTGAAGATGATTCATCCATTGTTGAGCCTGTTAAAAACCGTTTCAAAATTATCAAAGTTGATCCTCCTCAAACTCACCAAATTGCCGAGGTTCTTATTCAGATAGCAAAGAAAGAGGAAATTGATGTATCCCATAATTTTGCCGCAAAGATTGCCATAAAATCAAGGCAAAACCTGAGGAAGGCTATCATGGCGCTCGAAGCTTGCAAGGCGCACAACTATCCATTTTCAGAAGAACAACCGATTCCAATTGGATGGGAGGACATGGTGATAGAAGTAGCTGCAGAGATTCTAGCTGATCCATCATTTTCACGGTTAATGTCAATAAGAGGAAAATTTCAGATGCTTCTCCTGGATTTTGTCCATCCCAAACTGATCCTACAGAAATTGGTGGAAGAGCTCCTGAAAAGAATTGAGGTCAGCTTAAAAAGAGAACTCTACTATTGGCATTCTTATTATGAAAGAAGACTACCACCAGGAACAACAGCTTCATTAAAGTTAGAAGAATTTGTGGCCAAGTTCATGAGCATATACAGGAAAAGTTGCGGCACTCAACAATATGTGTAG 2136 0.427 MDNNRFLSQKYTAKSGYEPSDTETEWQEVPRHERERKNIALDHQDAKAFNLVSKSPLALHRRHQYNHSKFETEISSPTQPRRRQHLSKSPYKLRIAGDDDGCNADDHVPSPSPIRGLNTRRNISPLPKPDVGRTVSPYSRKHHVDVERVVDKQNYKRSVTAPRLREQQRRTPSPMAIGRVLNPPSVGEINEIIAEVKLSDDPNTLDESMTSTTTESIQPGDLFFSRESSALQGKKPSLLPQKLQQYGYYSPNPAAAAMNPHIRGLPASSLEDESNGDGMNIRGKGGSSMTSDGSVKTTDSMRKFTANRKKSQKDASWFACMRTGNCRTSMKSPERKRPIEASFIGRANVVETLPQFWADKHQPASLNGFICNKQEAQLLKELMSEGSCPHILLKGPSGSGKRELAMALLREIYGDACCNMSHELRSFPIQDKRPIKVCVSIASSAHHMELNVSMEPNAKYALLGLIKEISNIYAMTPEVSNVNFKPDYKVILLYGVDKAVENIQHMIKWIIDRYSDICKLVLCCEDDSSIVEPVKNRFKIIKVDPPQTHQIAEVLIQIAKKEEIDVSHNFAAKIAIKSRQNLRKAIMALEACKAHNYPFSEEQPIPIGWEDMVIEVAAEILADPSFSRLMSIRGKFQMLLLDFVHPKLILQKLVEELLKRIEVSLKRELYYWHSYYERRLPPGTTASLKLEEFVAKFMSIYRKSCGTQQYV 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181292g00013 711 MobiDBLite consensus disorder prediction 162 181 - -
Stsc181292g00013 711 MobiDBLite consensus disorder prediction 269 297 - -
Stsc181292g00013 711 MobiDBLite consensus disorder prediction 1 22 - -
Stsc181292g00013 711 SUPERFAMILY post-AAA+ oligomerization domain-like 608 701 IPR008921 GO:0003677|GO:0006260
Stsc181292g00013 711 MobiDBLite consensus disorder prediction 69 88 - -
Stsc181292g00013 711 FunFam Replication factor C subunit 3 355 546 - -
Stsc181292g00013 711 Gene3D - 608 701 - -
Stsc181292g00013 711 Gene3D - 548 605 - -
Stsc181292g00013 711 MobiDBLite consensus disorder prediction 70 84 - -
Stsc181292g00013 711 MobiDBLite consensus disorder prediction 1 31 - -
Stsc181292g00013 711 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 354 690 - -
Stsc181292g00013 711 Gene3D - 355 546 IPR027417 -
Stsc181292g00013 711 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 599 IPR027417 -
Stsc181292g00013 711 MobiDBLite consensus disorder prediction 98 136 - -
Stsc181292g00013 711 FunFam replication factor C subunit 3 547 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181292g00013 Stsc-Chr181292 31756 35425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181292g00013 356 702 Core DNA Replication Machinery Family AT5G27740 39.255 7.13e-80 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181292g00013 K10756 - gmx:100795321 919.457