Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181292g00004 ATGAATGATCTGATGACGAAATCGTTCTTAAGTTATGTTGAACTGAAGAAACAGGCCATGAAGGACCTGGAAATTGATCGTGATATTGAAGCAGGGCAACTCAACCCCACACAACAGCAACAAGATCCTAACCTCACTCAGTTCTTCCAAGAAGTGGATGCAATCAAGGTTGAAATGGAAGAGATCACCAATCTCTTACTTGATCTTCAGCAACTGAATGAAGAGGCAAAGTCCACACACAGTGCAAAAATCCTCCGTGGACTAAGAGACCGGATGGAATCTGACATGGTTGCGGTTCTTCGCAAGGCCAAGATCATCAAGGCAAGGCTTGAGGTCCTAGACCAATCCAACATAGCCAATAGAACTTTATCAGAGTCCTACAAAGAAGGTACACCAATTGATAGGACAAGGAATTCTGTCACAAATGGTTTGAGGGTCAAGCTTAGGGACATGATGAATGAGTTTCAGTCCTTGAGGGACAAGATACTGTCTGATCACAAGGAGGATTTGAAGAGAAGGTACTACAGCGCGACCGGCGAGGTTCCGAGTGAGGAGGTCATGGACAAGATGATCTCAGGGAGTCTCAAAGTTGAGTTTTTGGCTGGGAAAACAGATGCTGACATGGGAACTCAGATGAAGAAGAAGAGCCAGAAATGGTGGTTCTGGGTTTTTGCTGTTGGGATGATTGTGCTGTTGGTTTGCTTCATTGCAATGTTGACTTCTTGA 726 0.4463 MNDLMTKSFLSYVELKKQAMKDLEIDRDIEAGQLNPTQQQQDPNLTQFFQEVDAIKVEMEEITNLLLDLQQLNEEAKSTHSAKILRGLRDRMESDMVAVLRKAKIIKARLEVLDQSNIANRTLSESYKEGTPIDRTRNSVTNGLRVKLRDMMNEFQSLRDKILSDHKEDLKRRYYSATGEVPSEEVMDKMISGSLKVEFLAGKTDADMGTQMKKKSQKWWFWVFAVGMIVLLVCFIAMLTS 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181292g00004 241 SUPERFAMILY t-snare proteins 42 192 IPR010989 GO:0016020|GO:0016192
Stsc181292g00004 241 Coils Coil 52 79 - -
Stsc181292g00004 241 SMART SynN_4 40 167 IPR006011 GO:0016020
Stsc181292g00004 241 Pfam Syntaxin 47 201 IPR006011 GO:0016020
Stsc181292g00004 241 CDD SynN 48 195 IPR006011 GO:0016020
Stsc181292g00004 241 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 42 173 - -
Stsc181292g00004 241 Gene3D - 41 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181292g00004 Stsc-Chr181292 8950 10484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181292g00004 199 241 SNARE and Associated Proteins AT2G18260 45.455 3.91e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181292g00004 K08486 - gmx:112997615 338.191