Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181291g00031 ATGTTGCAGGCTGCAGTGCAATCACTTCACTGGACTTACACCCTCTTTTGGCAATTCTCTTCACAACAACGAGTTCTTAAGTGGAGCGATGGATTTTATAACGGAGAAATTAAAGTTAGGAGGACAGTTGAAGCAATGGATGATGTTAAAAGTAGTAGCAGTAGTGAGGATGAGGAGGCATCTCTCCAGAGAACCAACCAGCTTAGAGACCTCTATTATGAGTTACTATTGTCTGATGGTGCCAGCCATGGAGACATCGTCGCTAATGAACCTCCGGCAACTCCCCGGCCTTGCACGGCCTTGTCGCCGGAGGATCTTAGCGAATCCGAATGGTACTATTTGATGTGTGTCTCCTTCTCCTTTCCTCCTGGTGTAGGGTTGCCCGGAAAGGCATATGCGAGGAGGCAGCATGTTTGGCTGGAAGGTGCAAACGAAGCGGATACCAAGACATTTTCAAGAGCAATTCTTGCCAAGACTGTGGTGTGCATTCCTCTGTTGGATGGCGTCGTTGAACTCGGCACAACTGATAAGGTCCAAGAAAACATCAATTTCATCAAACATGTAAAGAGGTTCTTCATAGGAGATCACCACACTCTCCCACCAAAGCATCCTCTATCCGAAAACTCTGCCTCCAATCCCATCCTCGAAGAACCTCAACTGTTAATGGAGCTGGTCATGGAAGAGGACAGCTCGGCCACCGGATTGCCGGACGGTGGCTCCAATCGCCTGGACTCGTCTTGGTTGGAGCTACTTCCAGCTGAACCAGCAGCTTCAGTAGTAGAACTACTACATGGTGAAAGTGATAACTCAGAGGCTGAGACTTCTCAGCAGCTATGTTGTATGGAGCAAGAAGGCCACACACACTACTCTAAGACGGTGTCCACCATCCTAGAAGGCAGCTCCGGCCACCGCTGCCAGCCGGATTCATTACCCTCTGTTCGCCGCTTATTAGTAGATTCCTTCCAATCAGCTTTCGCCAAGTGGAGCACCAGTGCCAATTACTGCCACGAGGTGCTGGTGGTTGAAAACCCACAACGGCTCCTCAAGAACATATTGTTTCGGGTTCCATACTTGCATGGCAATCAAAAGCGCCAGAATACTAATTATTCAGCACAAACCCTAGAACAATTGGAAAAAATGATGCCTACTACTTCACATGATGATGACCTAATCAGCAGCCACGTGGCAGCAGAGCGGCGTCGTCGCGAAAAGCTGAACGAGAAGTTCATGACATTAAGGTCATTGGTACCATACGTGACCAAAATGGACAAGGCTTCTATATTAGGAGACACAATTGAGTACGTGAAACAGTTGCATGAGACAGTAAAGAAGCTTGAGGAGAAAGATGAACGGCGGAGAAGTGGAAAGAAGAGGAAGGAGAGGGCGGTGGAGGTTTCGGTGATAGAGGGTGAGGTTTTGTTGGAGGTGGAGTGTGTGGAGAAGGAAGGGTTGTTGCTTGATTTGATGAAGACATTGGAGGAGGTGGGAATAGAAGTGACAGGGGTAAAATCGTCATTTAAGGGTGATGATGATGAAAGGGTGTTTGTGGTGGAGTTAAGAGGGAAGGTTAAGAAAAATGCAAAAAGGAGAAATAAGATTAGCATTATGGAAGTCAAGAAGCTCCTTCACAACACTATAAACTCTCATCATCATCCACTACCATAA 1665 0.4727 MLQAAVQSLHWTYTLFWQFSSQQRVLKWSDGFYNGEIKVRRTVEAMDDVKSSSSSEDEEASLQRTNQLRDLYYELLLSDGASHGDIVANEPPATPRPCTALSPEDLSESEWYYLMCVSFSFPPGVGLPGKAYARRQHVWLEGANEADTKTFSRAILAKTVVCIPLLDGVVELGTTDKVQENINFIKHVKRFFIGDHHTLPPKHPLSENSASNPILEEPQLLMELVMEEDSSATGLPDGGSNRLDSSWLELLPAEPAASVVELLHGESDNSEAETSQQLCCMEQEGHTHYSKTVSTILEGSSGHRCQPDSLPSVRRLLVDSFQSAFAKWSTSANYCHEVLVVENPQRLLKNILFRVPYLHGNQKRQNTNYSAQTLEQLEKMMPTTSHDDDLISSHVAAERRRREKLNEKFMTLRSLVPYVTKMDKASILGDTIEYVKQLHETVKKLEEKDERRRSGKKRKERAVEVSVIEGEVLLEVECVEKEGLLLDLMKTLEEVGIEVTGVKSSFKGDDDERVFVVELRGKVKKNAKRRNKISIMEVKKLLHNTINSHHHPLP 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181291g00031 554 Gene3D - 384 451 IPR036638 GO:0046983
Stsc181291g00031 554 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 389 438 IPR011598 GO:0046983
Stsc181291g00031 554 PANTHER TRANSCRIPTION FACTOR TT8 1 546 - -
Stsc181291g00031 554 SMART finulus 395 444 IPR011598 GO:0046983
Stsc181291g00031 554 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 387 451 IPR036638 GO:0046983
Stsc181291g00031 554 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 2 192 IPR025610 -
Stsc181291g00031 554 Pfam Helix-loop-helix DNA-binding domain 393 439 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181291g00031 Stsc-Chr181291 154509 158376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181291g00031 1 546 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 45.242 1.10e-136 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc181291g00031 bHLH-MYC_N 2.3e-42 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181291g00031 - - aprc:113862120 429.869