Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181291g00024 ATGATTGTTCATTTTCTTGTGCGTACAGAATCCATTTCCGTGACTGAGGCAATAAACAGATTTGCTCAGGCTCGTTACCCCGGAATTTACAAGCAAGATTACATCGACGCCCTATATATGTTTTATCATGAAAAGAAGCCTGAAGATTTTGTTTGTCCTCCAACTCCAGAATGGAAAAGAGACTGTGAAATGGATTTTGATGGTGCTGCTGTCCCAGCTGTAAACAGTTATAGAGATATGCCTCCGCAGGTGCATGCTGTAGAAAATTATGGAAATGTTCCTCAGCAGGAGAATACCACGAGGAATGAAGTATTGACAAATGATGATGTTTTGGGAGATTCCATTCCTTCAAGTCAGCTGCATACAATGCAAGAAGTTTGTTATCAACTGCTCAAACTAGGCTCAGGGGGGAGAGGACGTCCGCAGTTTCCTGGATCACACCCTGTTTCTTTGAACAGTGAAAATCTACAACTCTTAAGACAGAGAAAGTTTCTCTTCAGAAAGATCAGCATGCGGTTTCCTTGCAGATACTCGAGTGGGGGTACACCTGAGATGAATCACCACTACACATTACTTGATGGAGAGATGATTATCGACACGGATCCACATACACATAAGCAAGAGAGAAGATACCTCATTTATGATCTGATGGCAATTAATCAAGTCTCAGTGACAGAGCGTCCATTCTATGAACGGTGGAAATTGCTGGAGAGAGAAGTAATTGAGCCTCGTAACATGGAACGAGAGGCTCTTTCCAAGAGTACAAATCCTTATTACAGATATGACTTGGAACCATTTGGTGTGAGGAGGAAAGGGTTTTGGTTACTTTCTACCGTGTCAAAGCTCCTTCATAAATTCATTCCACAACTCTCACATCAATCAGATGGTCTGGTGTTCCAGGGTTGGGATGATCCGTATGTCCCTCGCACACATGAAGGCCTTTTGAAGTGGAAATACCCTGAGATGAACTCTGTTGACTTCCTCTGTGAGGTTGGAGCAGGTGGTCGCCCCCTCCTTTATCTATTTGAACGTGGAAGGAAGAAGTTAATGGAAGGAAATAAAGTTATTTTTAAAGATGCATCAGATATTTATTCCTATTCAGGGAAGATCATTGAGTGCTACTGGGACAATGAAGAGCGTCACTGGGTCTGTATGAGGATCAGATTTGACAAAGCCAATCCAAATGAGATTAACACCTACAGAAAGGTAATGCGAAGCATAAAGGATAACATTACAGAAGAGTTGCTGTTGAATGAGATCAACGGAATCATTAGCCTACCCTTATATGCAGACAGAATACAAAGGGATATCAAGGCTCACCAGAACACCGTCTTGTCGCGGCGCAGATAA 1350 0.4244 MIVHFLVRTESISVTEAINRFAQARYPGIYKQDYIDALYMFYHEKKPEDFVCPPTPEWKRDCEMDFDGAAVPAVNSYRDMPPQVHAVENYGNVPQQENTTRNEVLTNDDVLGDSIPSSQLHTMQEVCYQLLKLGSGGRGRPQFPGSHPVSLNSENLQLLRQRKFLFRKISMRFPCRYSSGGTPEMNHHYTLLDGEMIIDTDPHTHKQERRYLIYDLMAINQVSVTERPFYERWKLLEREVIEPRNMEREALSKSTNPYYRYDLEPFGVRRKGFWLLSTVSKLLHKFIPQLSHQSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLCEVGAGGRPLLYLFERGRKKLMEGNKVIFKDASDIYSYSGKIIECYWDNEERHWVCMRIRFDKANPNEINTYRKVMRSIKDNITEELLLNEINGIISLPLYADRIQRDIKAHQNTVLSRRR 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181291g00024 449 Gene3D - 356 425 IPR012340 -
Stsc181291g00024 449 PIRSF mRNA_capping_HCE 1 165 IPR017074 GO:0004484|GO:0006370|GO:0140818
Stsc181291g00024 449 PIRSF mRNA_capping_HCE 161 449 IPR017074 GO:0004484|GO:0006370|GO:0140818
Stsc181291g00024 449 Pfam mRNA capping enzyme, catalytic domain 162 318 IPR001339 GO:0004484|GO:0005524|GO:0006370
Stsc181291g00024 449 Gene3D DNA ligase/mRNA capping enzyme 106 164 - -
Stsc181291g00024 449 PANTHER MRNA-CAPPING ENZYME 1 420 - -
Stsc181291g00024 449 Pfam mRNA capping enzyme, C-terminal domain 356 416 IPR013846 -
Stsc181291g00024 449 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 1 60 IPR029021 -
Stsc181291g00024 449 CDD Adenylation_mRNA_capping 118 319 IPR001339 GO:0004484|GO:0005524|GO:0006370
Stsc181291g00024 449 Gene3D DNA ligase/mRNA capping enzyme 165 318 - -
Stsc181291g00024 449 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 115 319 - -
Stsc181291g00024 449 Gene3D Protein tyrosine phosphatase superfamily 1 69 IPR029021 -
Stsc181291g00024 449 SUPERFAMILY Nucleic acid-binding proteins 321 433 IPR012340 -
Stsc181291g00024 449 FunFam mRNA capping enzyme family protein 317 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181291g00024 Stsc-Chr181291 108114 112687 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181291g00024 1 439 Protein tyrosine phosphatase (PTP) family AT3G09100 58.584 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181291g00024 K13917 - vra:106758011 736.102