Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181291g00023 ATGAGCTACCACGCGAATAGTGAAGATGGCCGCAGAGGTTGGAAAAGGAAGTTCCCGGAAAGGGGACGTTGGGGGAGAGAACAGAGGCCTTTCAATTCCAATACAAACTCTAGACCTTACGATAGAAACATGGTTCCTCCTGGTTGGTTAGGCTGCCCACCACATGGTCAAGAACTAGGATTCATAATACCTTCAAAGGTCCCACTCGGTGAATCCTTCAATGATAACACCCTAGGTCAGAAATATACTCCCAAGCAAGCAATTCTTCAGCAACAAGCATTAGGTAGAGAACTTGGTTTAGTGCTTGATCTGACAAATACTAATCGTTACTATCCAGTTTCAGATTGGACCGATGAAGGGATTAGTCATGTTAAGATAAGATGCAAGGGAAAAGATTCTGTGCCTGATGATGAATCTGTAAAAAAATTTTGTGACGAGGTTCTGGATTTTTGCTCCCGAAGAACAAATACAAAGAAATATATACTTGTACATTGCACGCATGGGCATAACCGTACAGGTTATATGATTGTTCATTTTCTTGTGCGTACAGAATCCATTTCCGTGACTGAGGCAATAAACAGATTTGCTCAGGCTCGTTACCCCGGAATTTACAAGCAAGATTACATCGACGCCCTATATATGTTTTATCATGAAAAGAAGCCTGAAGATTTTGTTTGTCCTCCAACTCCAGAATGGAAAAGAGACTGTGAAATGGATTTTGATGGTGCTGCTGTCCCAGCTGTAAACAGTTATAGAGATATGCCTCCGCAGGTGCATGCTGTAGAAAATTATGGAAATGTTCCTCAGCAGGAGAATACCACGAGGAATGAAGTATTGACAAATGATGATGTTTTGGGAGATTCCATTCCTTCAAGTCAGCTGCATACAATGCAAGAAGTTTGTTATCAACTGCTCAAACTAGGCTCAGGGGGGAGAGGACGTCCGCAGTTTCCTGGATCACACCCTGTTTCTTTGAACAGTGAAAATCTACAACTCTTAAGACAGAGGTATTACTATGCCACTTGGAAAGCTGATGGAACTCGTTACATGATGCTGATTACTTTTGATGGATGTTATCTGATCGACAGAAAGTTTCTCTTCAGAAAGATCAGCATGCGGTTTCCTTGCAGATACTCGAGTGGGGGTACACCTGAGATGAATCACCACTACACATTACTTGATGGAGAGATGATTATCGACACGGATCCACATACACATAAGCAAGAGAGAAGATACCTCATTTATGATCTGATGGCAATTAATCAAGTCTCAGTGACAGAGCGTCCATTCTATGAACGGTGGAAATTGCTGGAGAGAGAAGTAATTGAGCCTCGTAACATGGAACGAGAGGCTCTTTCCAAGAGTACAAATCCTTATTACAGATATGACTTGGAACCATTTGGTGTGAGGAGGAAAGGGTTTTGGTTACTTTCTACCGTGTCAAAGCTCCTTCATAAATTCATTCCACAACTCTCACATCAATCAGATGGTCTGGTGTTCCAGGGTTGGGATGATCCGTATGTCCCTCGCACACATGAAGGCCTTTTGAAGTGGAAATACCCTGAGATGAACTCTGTTGACTTCCTCTGTGAGGTTGGAGCAGGTGGTCGCCCCCTCCTTTATCTATTTGAACGTGGAAGGAAGAAGTTAATGGAAGGAAATAAAGTTATTTTTAAAGATGCATCAGATATTTATTCCTATTCAGGGAAGATCATTGAGTGCTACTGGGACAATGAAGAGCGTCACTGGGTCTGTATGAGGATCAGATTTGACAAAGCCAATCCAAATGAGATTAACACCTACAGAAAGGTAATGCGAAGCATAAAGGATAACATTACAGAAGAGTTGCTGTTGAATGAGATCAACGGAATCATTAGCCTACCCTTATATGCAGACAGAATACAAAGGGATATCAAGGCTCACCAGAACACCGTCTTGTCGCGGCGCAGATAA 1953 0.4229 MSYHANSEDGRRGWKRKFPERGRWGREQRPFNSNTNSRPYDRNMVPPGWLGCPPHGQELGFIIPSKVPLGESFNDNTLGQKYTPKQAILQQQALGRELGLVLDLTNTNRYYPVSDWTDEGISHVKIRCKGKDSVPDDESVKKFCDEVLDFCSRRTNTKKYILVHCTHGHNRTGYMIVHFLVRTESISVTEAINRFAQARYPGIYKQDYIDALYMFYHEKKPEDFVCPPTPEWKRDCEMDFDGAAVPAVNSYRDMPPQVHAVENYGNVPQQENTTRNEVLTNDDVLGDSIPSSQLHTMQEVCYQLLKLGSGGRGRPQFPGSHPVSLNSENLQLLRQRYYYATWKADGTRYMMLITFDGCYLIDRKFLFRKISMRFPCRYSSGGTPEMNHHYTLLDGEMIIDTDPHTHKQERRYLIYDLMAINQVSVTERPFYERWKLLEREVIEPRNMEREALSKSTNPYYRYDLEPFGVRRKGFWLLSTVSKLLHKFIPQLSHQSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLCEVGAGGRPLLYLFERGRKKLMEGNKVIFKDASDIYSYSGKIIECYWDNEERHWVCMRIRFDKANPNEINTYRKVMRSIKDNITEELLLNEINGIISLPLYADRIQRDIKAHQNTVLSRRR 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181291g00023 650 Pfam Dual specificity phosphatase, catalytic domain 90 216 IPR000340 GO:0008138|GO:0016311
Stsc181291g00023 650 Gene3D Protein tyrosine phosphatase superfamily 21 239 IPR029021 -
Stsc181291g00023 650 ProSiteProfiles Dual specificity protein phosphatase domain profile. 67 222 IPR020422 GO:0006470|GO:0008138
Stsc181291g00023 650 SUPERFAMILY Nucleic acid-binding proteins 522 634 IPR012340 -
Stsc181291g00023 650 FunFam mRNA capping enzyme, putative 280 517 - -
Stsc181291g00023 650 FunFam mRNA capping enzyme family protein 41 253 - -
Stsc181291g00023 650 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 45 234 IPR029021 -
Stsc181291g00023 650 CDD RNA_5'-triphosphatase 48 214 - -
Stsc181291g00023 650 Pfam mRNA capping enzyme, catalytic domain 321 519 IPR001339 GO:0004484|GO:0005524|GO:0006370
Stsc181291g00023 650 Pfam mRNA capping enzyme, C-terminal domain 557 617 IPR013846 -
Stsc181291g00023 650 Gene3D - 557 626 IPR012340 -
Stsc181291g00023 650 MobiDBLite consensus disorder prediction 8 27 - -
Stsc181291g00023 650 ProSitePatterns Tyrosine specific protein phosphatases active site. 163 173 IPR016130 GO:0016311|GO:0016791
Stsc181291g00023 650 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 286 520 - -
Stsc181291g00023 650 Gene3D DNA ligase/mRNA capping enzyme 280 519 - -
Stsc181291g00023 650 PANTHER MRNA-CAPPING ENZYME 40 621 - -
Stsc181291g00023 650 MobiDBLite consensus disorder prediction 1 42 - -
Stsc181291g00023 650 CDD Adenylation_mRNA_capping 292 520 IPR001339 GO:0004484|GO:0005524|GO:0006370
Stsc181291g00023 650 FunFam mRNA capping enzyme family protein 518 627 - -
Stsc181291g00023 650 PIRSF mRNA_capping_HCE 31 650 IPR017074 GO:0004484|GO:0006370|GO:0140818
Stsc181291g00023 650 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 141 199 IPR000387 GO:0016311|GO:0016791
Stsc181291g00023 650 SMART dsp_5 42 218 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181291g00023 Stsc-Chr181291 108114 115234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181291g00023 31 640 Protein tyrosine phosphatase (PTP) family AT3G09100 61.866 0.0 781
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181291g00023 K13917 - gmx:100778292 1085.09