Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181291g00017 ATGGAATCGAAAATGTCCTTTACTTCTGGTGGAACCAGTTGCCATGTTACTGGTTCAGCTGCTGAAGATGATCCAAACATGCAAGATGTTGTTGCAACTGAAGAAGGGAGTGGGAGCCAGTGGAGTTTCCTCCCAAAACCATCTCATCATAACTATGTTCAGTATCTGACTGAATCCTCAAACTATCTGCCTAAGACTGAGGATGTGATTGGAAGCAATTATGCAGCTCTTGGATTTGGAAACAATGCCAATGGAACAAACATGAACTTCTTTTGTAATGATCCTGGAAAAGCTTATGGCTTTAAGACTGAGGTTCATTCTTCCAATCAAGTAGACATTGCCAAGCAAGTTGGGTATTGGAGACCTGTTGAGAGTGAAGTCCAGCAGGAAGCAATGCAATTTGAGAGTATTCAACATCATCATCCTCTCTATCTTGAGAGTACTGCTTCATGGGCATCAGAAACAATTGGAGATAATCCTAATGTTTCGCGGCTTGGTCCATCGATAATGGCTGGCACTCCTAGTTTCCTTCCTAAACCAGGATGTAGCTCAACATCAAAGCAGAAAGCCAGTGACCGACAACGCAGGCAACGAATTTCTGATAATCTGAAAGCACTACACGACTTGCTTCCAAATCAAGCAGAGGGTAGTCAAGCATATATACTGGACGACATTATTGACCATGTTAAATATTTGCAGCTTCAACTAAAGGAACTAAGTGGAAGAAGACTTCAAACTGAATCAACTGCTATACCACTTGTTTTCCATGAGCAGGGTTATGGGCATTATATTGACCAGCAGAAGCTGAATGAACCTCTTGAAGAGATGATGGGAAAACTTCTTGAAGAGAATCCTGCATCTGCCAGTCAGCTTCTGGAGAGCAATGGTCTTGTCCTGCTGCCTATGGATTTGGTTCAAGACTTGCACCAATCCATGCAAATCTTTGGCAGCGGCTCTGCACTGTAA 966 0.4286 MESKMSFTSGGTSCHVTGSAAEDDPNMQDVVATEEGSGSQWSFLPKPSHHNYVQYLTESSNYLPKTEDVIGSNYAALGFGNNANGTNMNFFCNDPGKAYGFKTEVHSSNQVDIAKQVGYWRPVESEVQQEAMQFESIQHHHPLYLESTASWASETIGDNPNVSRLGPSIMAGTPSFLPKPGCSSTSKQKASDRQRRQRISDNLKALHDLLPNQAEGSQAYILDDIIDHVKYLQLQLKELSGRRLQTESTAIPLVFHEQGYGHYIDQQKLNEPLEEMMGKLLEENPASASQLLESNGLVLLPMDLVQDLHQSMQIFGSGSAL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181291g00017 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 189 248 IPR036638 GO:0046983
Stsc181291g00017 321 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 49 304 - -
Stsc181291g00017 321 SMART finulus 189 238 IPR011598 GO:0046983
Stsc181291g00017 321 MobiDBLite consensus disorder prediction 175 197 - -
Stsc181291g00017 321 CDD bHLH_AtbHLH_like 191 240 IPR045239 -
Stsc181291g00017 321 Pfam Helix-loop-helix DNA-binding domain 188 233 IPR011598 GO:0046983
Stsc181291g00017 321 MobiDBLite consensus disorder prediction 1 16 - -
Stsc181291g00017 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 232 IPR011598 GO:0046983
Stsc181291g00017 321 Gene3D - 183 251 IPR036638 GO:0046983
Stsc181291g00017 321 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181291g00017 Stsc-Chr181291 90913 93983 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181291g00017 184 308 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 35.714 6.97e-18 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc181291g00017 HLH 4.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181291g00017 - - cam:101507064 316.235