Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181291g00016 ATGGAATCGAAAATGTCCTTTACTTCTGGTGGAACCAGTTGCCATGTTACTGGTTCAGCTGCTGAAGATGATCCAAACATGCAAGATGTTGTTGCAACTGAAGAAGGGAGTGGGAGCCAGTGGAGTTTCCTCCCAAAACCATCTCATCATAACTATGTTCAGTATCTGACTGAATCCTCAAACTATCTGCCTAAGACTGAGGATGTGATTGGAAGCAATTATGCAGCTCTTGGATTTGGAAACAATGCCAATGGAACAAACATGAACTTCTTTTGTAATGATCCTGGAAAAGCTTATGGCTTTAAGACTGAGGTTCATTCTTCCAATCAAGTAGACATTGCCAAGCAAGTTGGGTATTGGAGACCTGTTGAGAGTGAAGTCCAGCAGGAAGCAATGCAATTTGAGAGTATTCAACATCATCATCCTCTCTATCTTGAGAGTACTGCTTCATGGGCATCAGAAACAATTGGAGATAATCCTAATGTTTCGCGGCTTGGTCCATCGATAATGGCTGGCACTCCTAGTTTCCTTCCTAAACCAGGATGTAGCTCAACATCAAAGCAGAAAGCCAGTGACCGAGTAAGTCAACAACGCAGGCAACGAATTTCTGATAATCTGAAAGCACTACACGACTTGCTTCCAAATCAAGCAGAGGGTAGTCAAGCATATATACTGGACGACATTATTGACCATGTTAAATATTTGCAGCTTCAACTAAAGGAACTAAGTGGAAGAAGACTTCAAACTGAATCAACTGCTATACCACTTGTTTTCCATGAGGTATATGTCTTATCCTTAACATTAGTAGATAATAATGGACACAAAATCATAAGAATTCATGTTCTAGCCCAAATTCTACCTCACAAAAATATCAAATATCTTCCCTCCAGAGTACCAAATTCAATGACTGGAGATCTTGTTTTGTTTGATTAG 933 0.4009 MESKMSFTSGGTSCHVTGSAAEDDPNMQDVVATEEGSGSQWSFLPKPSHHNYVQYLTESSNYLPKTEDVIGSNYAALGFGNNANGTNMNFFCNDPGKAYGFKTEVHSSNQVDIAKQVGYWRPVESEVQQEAMQFESIQHHHPLYLESTASWASETIGDNPNVSRLGPSIMAGTPSFLPKPGCSSTSKQKASDRVSQQRRQRISDNLKALHDLLPNQAEGSQAYILDDIIDHVKYLQLQLKELSGRRLQTESTAIPLVFHEVYVLSLTLVDNNGHKIIRIHVLAQILPHKNIKYLPSRVPNSMTGDLVLFD 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181291g00016 310 Gene3D - 184 254 IPR036638 GO:0046983
Stsc181291g00016 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 186 235 IPR011598 GO:0046983
Stsc181291g00016 310 MobiDBLite consensus disorder prediction 1 16 - -
Stsc181291g00016 310 CDD bHLH_AtbHLH_like 193 243 IPR045239 -
Stsc181291g00016 310 SMART finulus 189 241 IPR011598 GO:0046983
Stsc181291g00016 310 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 49 248 - -
Stsc181291g00016 310 MobiDBLite consensus disorder prediction 176 200 - -
Stsc181291g00016 310 Pfam Helix-loop-helix DNA-binding domain 196 236 IPR011598 GO:0046983
Stsc181291g00016 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 251 IPR036638 GO:0046983
Stsc181291g00016 310 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181291g00016 Stsc-Chr181291 90913 93983 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181291g00016 198 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 54.000 1.18e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc181291g00016 HLH 7.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181291g00016 - - cam:101507064 243.047