Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181291g00015 ATGACCATATCAATGGTATTGTGCAATCCATCAACACAACCAATGATAAATGTTCCTTGCAATGGCCCTAAACTTATCAATGCTAAGCACAAAGAGAAGGTGGTTTTGGTGATGGGAGCGACCGGGACCGGGAAATCCCGGCTCTCCATCGACCTTGGAACATGTTTTCCATCAGAAATCATCAACTCCGACAAAATTCAAGCCTATCAAGGGCTAGAAATAGCCACAAACAAGGTCACAAAAGAAGAACAGCGAGGCGTACCACATCATTTGCTAGGGATACATAATCCCTACACTGAGTTCACGGCCAATGATTTCTGTGACATGGCCTCTGTGGCCACGGAATCAATCATCGGCCGCGAACAACTCCCGATCATAGTCGGGGGATCAAATTCCTATGTGGAAGCATTAGTAGAAAGATTTGGTTCAAGGTATGAGTGGCTTATTCTTTGGTTGGATGTTTCAATGCCAATCCTCCATTCCTATGTGTCTAAGCGAGTGGAGGACATGGTTGAGAAGGGAATGGTGAATGAATTGAGACCCTTCTTCAGTCCCAATGGAGATTACTCCAAAGGGATAAGAAAAGCCATTGGGGTGCCAGAATTCGACATGTTCTTTCGAAGTGAAGAAGAGACAACATGGGATGATGAGAGAACTAAGCAGAGGCTGTTTGATGAAGCCATCAGGGAAGTGAAGCTGAACACGTGCAGATTGGCTTGCAAGCAGTTTGAGAGGATTCAGAGGCTTAGGAATGTGAAGAGATGGAAAATGCAGCGTGTTTGTGCGAGTAGAGTGTTTGAAATGCATGGAAATGATGATGAAGCAGCAGATGAAGCATGGAGGAAGATGGTGGCAGAGCCAAGTGCAAGATTAGTAGCACAGTTTCTTTATAATGAAGCCATTAATAATGTTTCTGGTGGGATTAGTGTGCCTGGTTCTTGTTCTGTATCTTGCAGAGTTGTCAAGTGTTGA 972 0.4455 MTISMVLCNPSTQPMINVPCNGPKLINAKHKEKVVLVMGATGTGKSRLSIDLGTCFPSEIINSDKIQAYQGLEIATNKVTKEEQRGVPHHLLGIHNPYTEFTANDFCDMASVATESIIGREQLPIIVGGSNSYVEALVERFGSRYEWLILWLDVSMPILHSYVSKRVEDMVEKGMVNELRPFFSPNGDYSKGIRKAIGVPEFDMFFRSEEETTWDDERTKQRLFDEAIREVKLNTCRLACKQFERIQRLRNVKRWKMQRVCASRVFEMHGNDDEAADEAWRKMVAEPSARLVAQFLYNEAINNVSGGISVPGSCSVSCRVVKC 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181291g00015 323 Pfam IPP transferase 144 245 - -
Stsc181291g00015 323 Pfam IPP transferase 67 141 - -
Stsc181291g00015 323 FunFam Adenylate isopentenyltransferase 5, chloroplastic 156 257 - -
Stsc181291g00015 323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 175 IPR027417 -
Stsc181291g00015 323 Gene3D - 31 296 IPR027417 -
Stsc181291g00015 323 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 156 257 - -
Stsc181291g00015 323 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 31 295 IPR039657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181291g00015 Stsc-Chr181291 87858 88931 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181291g00015 142 300 C2H2 Transcription Factor Family AT2G27760 28.415 3.75e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181291g00015 K10760 - gmx:100777757 390.963