Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181290g00025 ATGGGTCAGCAATACTCCTCCTCCTCTGCCCATCCCTTTTCCTCCTTCAGCTATGCATGGAAATATGATGTGTTTATTAGTTTCAGAGGCGAAGATACTCGCTACAGTTTTACTGGCTATCTTTATGATGCTCTTTGTAAGAAAGGAATCCACACCTTCATTGATGATGAGGAGCTTCCAAAAGGAGATGAAATCACACCCTCACTTCTCAGCTCAATTCAAGAGTCTAGGATTGCCATCATTGTCCTCTCCACTAACTATGCTTCTTCTTCTTTTTGCTTAGATGAGCTTGTCCACATCCTTCACTGCATCAAGGGAAATAATCGGTTGGTTCTGCCGGTTTTCTATAATGTTGATCCTTCTGATGTTCGCCATCTGAGAAAGAGTTTCGAAACAGCAATTGCGAAGCATGAGAAGAGATGCAAGGATGACATGAACAACAAGGTGGATAAATGGAAGAAGGCTCTCCATCAAGTAGCTAATTTATCTGGCTACCATTTCAAACATGGGGATGGATATGAACATAAGTTTATTACAAATATCGCGGAAGACATTTCAAGAAAGATAAGCCGTGTACCTTTGCCAGTTGCTAACTACCCTGTTGGACTAGAGTCTCGAGTGTCACCAGTAATTTCACTTTTGGAAATGGATTCTTGTGATCAAGTTCACATGGTAGGGATACATGGAATTGGTGGCATAGGAAAAACAACTCTTGCTATTGCTGTTTATAACTTGATTGCTGATCATTTTGAAGATGTGTGCTTTCTTGAAAACGTGAGAGAAAATTCAAGTAAATATGGCTTGGTACATCTTCAAAATAATCTTCTTTGTAAGTTATTAGGGAAAGAAGGAGTCCAGATAAAGGGTGTTAAAGAAGGAACCTCACAGATACAACAAAGGCTTTGTCGAAAGAAGCTTCTTTTGGTTCTGGATGACGTTGATGATCTCATGCAGCTACAAGCTATTGCTGGAAAACTTGATTGGTTTGGTCGGGGTAGCAGAGTTATTATTACAACACGAGACACACATTTACTAAAGTGTCATGGTGTTGAAAAAGCATATGAGGACATACATTAG 1077 0.3983 MGQQYSSSSAHPFSSFSYAWKYDVFISFRGEDTRYSFTGYLYDALCKKGIHTFIDDEELPKGDEITPSLLSSIQESRIAIIVLSTNYASSSFCLDELVHILHCIKGNNRLVLPVFYNVDPSDVRHLRKSFETAIAKHEKRCKDDMNNKVDKWKKALHQVANLSGYHFKHGDGYEHKFITNIAEDISRKISRVPLPVANYPVGLESRVSPVISLLEMDSCDQVHMVGIHGIGGIGKTTLAIAVYNLIADHFEDVCFLENVRENSSKYGLVHLQNNLLCKLLGKEGVQIKGVKEGTSQIQQRLCRKKLLLVLDDVDDLMQLQAIAGKLDWFGRGSRVIITTRDTHLLKCHGVEKAYEDIH 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181290g00025 358 Gene3D - 192 354 IPR027417 -
Stsc181290g00025 358 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 191 - -
Stsc181290g00025 358 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 350 IPR027417 -
Stsc181290g00025 358 PRINTS Disease resistance protein signature 300 314 - -
Stsc181290g00025 358 PRINTS Disease resistance protein signature 224 239 - -
Stsc181290g00025 358 Gene3D - 16 191 IPR035897 -
Stsc181290g00025 358 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 346 IPR044974 GO:0006952
Stsc181290g00025 358 Pfam TIR domain 21 189 IPR000157 GO:0007165
Stsc181290g00025 358 ProSiteProfiles TIR domain profile. 20 189 IPR000157 GO:0007165
Stsc181290g00025 358 SMART till_3 21 162 IPR000157 GO:0007165
Stsc181290g00025 358 Pfam NB-ARC domain 211 350 IPR002182 GO:0043531
Stsc181290g00025 358 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 165 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181290g00025 Stsc-Chr181290 153734 155222 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181290g00025 10 355 WRKY Transcription Factor Family AT4G12020 28.000 2.52e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181290g00025 - - aip:110272157 524.628