Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181290g00023 ATGGCTCTGCAGTTCTCCTTCTCCTCTTCCTCTTCCTCCTCCTGCCATCCCTTTTCATCTTCTTCCATCAAATATGAATGGAAATATGATGTGTTTATTAGTTTCAGAGGCCAAGATACTCGCTTAGGTTTCACTGGCAACATCTACAGTGCACTCCATAAGAAAGGAATCCACACCTTCTTTGATGATGACAAGCTTCAAAGTGGAGAGGAGATCACACCTGCACTTCTCAACGCAATTCAAAACTCCAGGATTGCCATCATTGTGCTCTCTCCTAACTATGCTGCTTCTTCTTTTTGCTTAGATGAACTCCTCCATATCCTTCACTGCATCAAGGCAAACAATCGTTTTGTTTTGCCCGTTTTCTGTGAGGTGGATCCTTCTGATGTGCGCCATCTAAAAAACAGTTTTGGAGAAGCAATGGCTAAGCATGAGAAGAGATACAAGAATGATATGAACAAGGTGGATAAATGGAAGAAGGCTCTAAAAGAAGTAGCCAATTTGTCAGGCTATCATTTCAAACACGGGCAAGGATATGAACATGAGTTTATTAAAAAGATCGTGGAAGACATTTCGAGAAAGATAAGGCGTGTACCTTTGCCAGTGGCTGACTACCCTGTTGGACTTGAGTCTCCAGTGTCAAGACTAATTTCGCTTTTGAAAATGGACTCTACTGATCGAGTTCATATGGTAGGGATACATGGAATCGGTGGCATAGGTAAAACAACACTTGCTCTTGCCATTTATAACTTGATTGCTGATAATTTTGAAGGTGTGTGCTTTCTGGAAAATGTGAGAGAAAACTCACAAAAGCATGGGTTGATGCATCTTCAAAAGGATCTTCTTTATAAGATATTAGGGAAGGAGGGAATCCACATAATAGGTGTTAATGAAGGAATTTCACAGATACAACGTAGGCTCAGCCAAATGAAAGTTCTTTTGGTTTTGGATGACGTTGACGATTCCAAGCAGCTACAAGCTATTGCTGGAAAACTTGATTGGTTTGGTGGGGGTAGCAGGGTCATAATTACAACACGGGACACACATTTGCTAAAACTCCATGGTGTTGAAAGGACATATTACGTCCATGGTTTAAATAGGAAAGAGTCCTTTAAGTTGCTTATCTGGAAAGCTTTTAAAACTACTGTTAGCCCACCAAGTTATGCAGATGTTTTAAATCGTGCGATAACTTATGCCTCTGGACATCCACTTGCTTTGGAATTAATAGGCTCCAACTTGTTTGGAAAAGTAGTAGATGTTTGGGAATCTGCATTGGATGAATTTGAAAAACATCTTGATGATAAAATACATAACATACTTCGAGTAAGTTTTGATGCTTTGGGAAAACAAGAGCAAAGTGTTTTTCTTGATATTGCCTGTTGTCTTAAAGGATATACATTAGAGGAAACTACTGATATACTTCATGCTCATTATGGACGTTCGATGAAATATCATATTAGAGTGTTGGATGAAAAATCTCTCTTAAAGATAGGTATATGGGGTGACACATTCATGCATGATTTGATAGAGAACATGGGCAAAGAAATTGTTCTAGAAGAATCACCTGACATGCCTGGAAGGCGTAGTAGGTTATGGTTTCACAAAGATATAGTTCAAGTTTTAGAAAACAATCAAGGGACTAGCGCCATTGAAATCATACATCTGGAAGAGGCAAATGAAGACATAGAAGTGAAATGGGATGGGAAAGCTTTTAAGGATATGAAAAACCTTAAAACGCTTATTATAAAAAATGGTTGGTTTTCCAGAAGTCCTAGACATCTTCCAAACAATTTAAAAGTATTGGAATGGAGGGGGTTTCCTTCAAAATATTTTCCATCTGATTTTCAACCAAAGGAACTCTCCATACTCAAGTTACCCAATAATCTCTATTTATCACCCAAGTTGGATAGTTTATTCAAGAAGTCGGTGAGCTTAAAAGTTTTGAATTTTGATAACAACAATTCTTTGAAAGAAATCCCTGATGTGTCTAGTCTTCAAAGTTTAGAAGAATTTTCATTCCGGGGATGTAAAAATTTAGTTACAGTTCACAGTTCGGTTGGTATTCTACCTAAACTTAAGAGATTTCATGCTGAATATTGTGACAAGCTGAGGAATTTTCCACCTGTTATCAAATTGCCCTCACTGAAAGATTTCAGTCTATATGGTTGCTCAAGCCTTGAGTATTTTCCCGAAATTCTAGAAGAGATGGATAATGTAAAAAGTCTTGATTTGAGTGGCACATGCATAAAACATTTGCCATTTTCATTTCATAATCTTTCTGGATTGCAGTATTTGACAATAAAGGAGGGGAAAATGGGTAAGATGCCAAGTGCAATTTTTATGATGCCACAACTGAAAGATTGTAAGATTTGGGGAAGTGGCAACAAGGGGAGTACTGTATCAGCAGAGTATAAGAGAGTGTATCAAAATATTATTTTGACTTACTTGAAGGAAAGCAATATGGAATATCTTGATCTCACAAACATGAATTTGTTAGATGATTTTTTTCAGCTAGCTGTTGCATGGTTTCCCATGATGACAGATTTAAAACTAGCAGGCAACAATTTCACAGTCCTTCCTGAATGCATCCAACAATTTCGCTTTCTATTGCGCCTCGAAGTGGATGATTGCCAGCATCTTCGGGAGATTAGAGGATTTCCACCGAAGCTGGAATTCTTTTCAGCATTAAACTGCAAATCATTGAGTCTCGGAGGCACAAACGTGTTACTCAATCAGGAAGCGCATGAGAATGGATGGACCCACTACGTGATGCCAGGTGGAATGATTCCAAGATGGTTTGAGAAGCGCTGCAGTGGAGATTCTATTTCTTTCTGGTTTCATGGCACCATATTCCCTTGCACTGTTTTTTGCTTTGCAATTCTACTCAAGGATGATCTCCCTTCCCCAATTCAAGTAGCACCCATCCTGACCATCAATGGCAACCATGTTTTCCGTGGGCAGAAGACCACAATGGAGCAATTGTTTATTTTTGATCTGTCCACAGAAATTGATTTTGATGTAACACGTCGTTTTGAAAAAGGATGGAATCATGCGGAGGTTTCATATGAAGCATATAATTGTGACGAAAAGGTCATCCCAAGTGAGTCAATTGCAAAAGAGATTGGAATGGACGTATTCAACCAAATTCGTAGGAGTACGATTCCACATATTCGATTCAGTGATCCTTACAAAATGACAGAACTTATTATAATGATGATGATAGTCTCAATAGTGTTGCCCGACCCTGAGAAGCAACCCTTGCTCCTTGATACATGCATTGATTTGTGGAGAATGCTAAACGGGTGTCACCACTTGTGTAATTATTAG 3327 0.3862 MALQFSFSSSSSSSCHPFSSSSIKYEWKYDVFISFRGQDTRLGFTGNIYSALHKKGIHTFFDDDKLQSGEEITPALLNAIQNSRIAIIVLSPNYAASSFCLDELLHILHCIKANNRFVLPVFCEVDPSDVRHLKNSFGEAMAKHEKRYKNDMNKVDKWKKALKEVANLSGYHFKHGQGYEHEFIKKIVEDISRKIRRVPLPVADYPVGLESPVSRLISLLKMDSTDRVHMVGIHGIGGIGKTTLALAIYNLIADNFEGVCFLENVRENSQKHGLMHLQKDLLYKILGKEGIHIIGVNEGISQIQRRLSQMKVLLVLDDVDDSKQLQAIAGKLDWFGGGSRVIITTRDTHLLKLHGVERTYYVHGLNRKESFKLLIWKAFKTTVSPPSYADVLNRAITYASGHPLALELIGSNLFGKVVDVWESALDEFEKHLDDKIHNILRVSFDALGKQEQSVFLDIACCLKGYTLEETTDILHAHYGRSMKYHIRVLDEKSLLKIGIWGDTFMHDLIENMGKEIVLEESPDMPGRRSRLWFHKDIVQVLENNQGTSAIEIIHLEEANEDIEVKWDGKAFKDMKNLKTLIIKNGWFSRSPRHLPNNLKVLEWRGFPSKYFPSDFQPKELSILKLPNNLYLSPKLDSLFKKSVSLKVLNFDNNNSLKEIPDVSSLQSLEEFSFRGCKNLVTVHSSVGILPKLKRFHAEYCDKLRNFPPVIKLPSLKDFSLYGCSSLEYFPEILEEMDNVKSLDLSGTCIKHLPFSFHNLSGLQYLTIKEGKMGKMPSAIFMMPQLKDCKIWGSGNKGSTVSAEYKRVYQNIILTYLKESNMEYLDLTNMNLLDDFFQLAVAWFPMMTDLKLAGNNFTVLPECIQQFRFLLRLEVDDCQHLREIRGFPPKLEFFSALNCKSLSLGGTNVLLNQEAHENGWTHYVMPGGMIPRWFEKRCSGDSISFWFHGTIFPCTVFCFAILLKDDLPSPIQVAPILTINGNHVFRGQKTTMEQLFIFDLSTEIDFDVTRRFEKGWNHAEVSYEAYNCDEKVIPSESIAKEIGMDVFNQIRRSTIPHIRFSDPYKMTELIIMMMIVSIVLPDPEKQPLLLDTCIDLWRMLNGCHHLCNY 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181290g00023 1108 Gene3D - 198 359 IPR027417 -
Stsc181290g00023 1108 Coils Coil 141 161 - -
Stsc181290g00023 1108 MobiDBLite consensus disorder prediction 1 20 - -
Stsc181290g00023 1108 FunFam Disease resistance protein (TIR-NBS-LRR class) 25 197 - -
Stsc181290g00023 1108 Pfam TIR domain 28 194 IPR000157 GO:0007165
Stsc181290g00023 1108 ProSiteProfiles Leucine-rich repeat profile. 644 666 IPR001611 GO:0005515
Stsc181290g00023 1108 SUPERFAMILY L domain-like 521 902 - -
Stsc181290g00023 1108 Gene3D - 364 448 IPR042197 -
Stsc181290g00023 1108 Gene3D - 23 197 IPR035897 -
Stsc181290g00023 1108 Gene3D Ribonuclease Inhibitor 529 728 IPR032675 -
Stsc181290g00023 1108 SMART AAA_5 227 365 IPR003593 GO:0016887
Stsc181290g00023 1108 ProSiteProfiles TIR domain profile. 27 195 IPR000157 GO:0007165
Stsc181290g00023 1108 SUPERFAMILY Toll/Interleukin receptor TIR domain 19 171 IPR035897 -
Stsc181290g00023 1108 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 458 IPR027417 -
Stsc181290g00023 1108 PRINTS Disease resistance protein signature 230 245 - -
Stsc181290g00023 1108 PRINTS Disease resistance protein signature 710 726 - -
Stsc181290g00023 1108 PRINTS Disease resistance protein signature 306 320 - -
Stsc181290g00023 1108 PRINTS Disease resistance protein signature 399 413 - -
Stsc181290g00023 1108 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 29 886 IPR044974 GO:0006952
Stsc181290g00023 1108 Gene3D Ribonuclease Inhibitor 729 911 IPR032675 -
Stsc181290g00023 1108 SMART till_3 28 168 IPR000157 GO:0007165
Stsc181290g00023 1108 Pfam NB-ARC domain 211 437 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181290g00023 Stsc-Chr181290 144237 148466 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181290g00023 18 792 WRKY Transcription Factor Family AT4G12020 30.615 1.60e-76 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181290g00023 - - aip:107644584 1394.02