Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181290g00019 ATGTCTTCTTCCGGCGGCGTCACCTCCGGCAACCCCCAGCAATACTTCTGCCACCAGTGCAACCGTACAGTCTCCATCGTCCCTTCTTCCTCCTCCGAGCTCCTCTGCCCTAACTGCAACGAAGGCTTCCTCGAAGAGCTCGAAACTCCAATCCCTAACCCTAACCTCATCAATCCTTTCTTCTCCTTCAACTCTGACTTCTCCGGAGGCCCCTCCGCCGGAAACCTCCCCTTCTTATTCTCCGGTGGTGGCGACGATCTATCCACGCTGCTTGGCGGTGGCGGTGGTAATACCGCCGCTGCCGGCGAAGCCTTTAACCCCTTTGTGTTCCTCCAGAACTACCTCCAAACCCTAAGAGCTGGCGGCGCTAACGTCCAGTTCGTGATCGAGAACTCCGGCGACCCTACCACCGGAACGTTCCGGTTTCCCGGCGGTAACATGACTCACGGTGATTACTTCTTCGGCCCGGGGCTCGAGGAGCTGATCCAGCAGCTAGCGGAGAACGATCCGAATCGGTACGGGACGCCGCCTGCATCGAAGTCAGCCGTACAGGGGCTGCCGGACGTGTCGGTGACGGAGGAGCTGCTGGAATCGGATTCTTCTCAGTGCGCGGTGTGTAAGGACACCTTCAAGCTTGGCGAATCGGTGAAGCAGATCCCTTGCAAGCACATATACCATTCCGATTGCATCTTGCCGTGGCTGGAACTGCATAATTCGTGCCCAGTTTGCCGTTACGAGTTGCCTACCGATGATCCGGATTATGAGCGGAGGGCTCAGCGTGGTGGGGTTCCTACGCCTGCCCCAGTGAACCGGTCTGTAGGGGCAGGCGGTTCAGCTGAATCCCCTGGAGGAAGTGGTGGTGGTGTTGGCGGCGACAATGATGGCGGCGATAATAGGCAAACGATGGAGAGGAGGGTGTTTAGGGTTTCTTTGCCGTGGCCGTTTAGGCAATTTGGTGGTTCTCCTGCGGAGACAAGCAATGTTGGGAACAACAACAACAGCAACAATGGCGGAAACAACAACAGTGAAAATAACAGTGGCCAATCGAATTCCGAAAGTAGGGGGAATCGGAATTTTGAGTCAGAGACCAGACAAGAAGATCTTGATTGA 1110 0.5604 MSSSGGVTSGNPQQYFCHQCNRTVSIVPSSSSELLCPNCNEGFLEELETPIPNPNLINPFFSFNSDFSGGPSAGNLPFLFSGGGDDLSTLLGGGGGNTAAAGEAFNPFVFLQNYLQTLRAGGANVQFVIENSGDPTTGTFRFPGGNMTHGDYFFGPGLEELIQQLAENDPNRYGTPPASKSAVQGLPDVSVTEELLESDSSQCAVCKDTFKLGESVKQIPCKHIYHSDCILPWLELHNSCPVCRYELPTDDPDYERRAQRGGVPTPAPVNRSVGAGGSAESPGGSGGGVGGDNDGGDNRQTMERRVFRVSLPWPFRQFGGSPAETSNVGNNNNSNNGGNNNSENNSGQSNSESRGNRNFESETRQEDLD 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181290g00019 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 104 248 - -
Stsc181290g00019 369 MobiDBLite consensus disorder prediction 317 369 - -
Stsc181290g00019 369 FunFam E3 ubiquitin-protein ligase RING1-like 164 250 - -
Stsc181290g00019 369 ProSiteProfiles Zinc finger RING-type profile. 203 244 IPR001841 -
Stsc181290g00019 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 250 IPR013083 -
Stsc181290g00019 369 MobiDBLite consensus disorder prediction 254 299 - -
Stsc181290g00019 369 SMART ring_2 203 243 IPR001841 -
Stsc181290g00019 369 Pfam zinc-ribbon 13 47 IPR039525 GO:0061630
Stsc181290g00019 369 MobiDBLite consensus disorder prediction 320 356 - -
Stsc181290g00019 369 Pfam Zinc finger, C3HC4 type (RING finger) 202 243 - -
Stsc181290g00019 369 SUPERFAMILY RING/U-box 187 250 - -
Stsc181290g00019 369 CDD RING-H2_RNF126-like 202 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181290g00019 Stsc-Chr181290 120043 121776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181290g00019 161 257 C3H Transcription Factor Family AT5G15820 57.732 1.05e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181290g00019 K11982 - gmx:100784504 406.757