Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181289g00022 ATGACTGATATTAGGAAGTGGTTCATGAAATCGCACGACAAGGGCAATGCCAATGCCTCCTCCAAGCCCACTACCGAAAAACCCCAGTCGGACAAACCGGCGTCTGGAGGTCAAGAAAGTTCGGGGAGGAGGAAAACTAGCAAATATTTTTCTACAGACAAACAAAAGGGGAAAGATGAGAAAGAAACACTGGAGCTCCCTGCTAAACGAAAGAATATAAAGGACAGTGGAGAACTACCGGAGCCCCGTGCTTCAAAGAAAATTCATGAAGCTGAAGAAGATGAGGGAGATGACTATGCTTTGCCAACAAATAAAAAGAATTCTGCTGATGCTACTCCGACAAAGAAACTGAAGAGTGGGTCTGGTAGGGGGATCCCGCAGAAATCTGTAGATGTAGAAGAAAATGATGAAGATGACAAGAAAGAAGCTGCGGCATCAGTTAAATCTGCTGGAAGGGGTCGTGGTGGTAGAGGAGCATCGGCACAACCATCTGGTGGGAGGGGCAGAGGTGGTGGTGGCAGGGGTGGATTCATGAATTTTGGAGAAAGAAAAGACCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCCGACTGTTTAGCTGGTTTAACTTTTGTGATCAGCGGAACACTGGATAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAGCGGCATGGTGGCCGCGTCACGGGATCAGTCAGCAAGAAAACGAATTATTTGCTATGTGATGAAGATATTGGTGGACGGAAGTCTGAAAAAGCCAAAGAGCTTGGAACTAAATTTCTCACGGAGGATGGGTTGTTTGATATGATTCGGGCATCGAAACCAGCAAAAGCTCCTTCACAAGAACCCAAAAAGTCTGTCGATAATAAGCCTGCTACTAATGCATCCCAGTCAAAAAGTCCCGCAAAAGTAGAATCTAAGCCCATTCTATCTTCACGGCTGCCTTCTATCCCAGCTAAGCCAAAGACAGCAGCGACTGTTCACTCTTCTTTGATGTGGACAGAGAAATATCGACCTAAAGATCCAAAGGATGTGATAGGAAATCAGTCACTTGTTTCACAGCTCAGAAATTGGTTGAAAACTTGGAACGAGCAATTTCTTAACACTGGCAGTAAAAAAAAGGGAAAAAAGCCAAACGACCCGAATTCCAAGAAAGCTGTGTTATTAAGTGGAACCCCTGGTATAGGGAAAACTACTTCAGCAAAGCTTGTCTGTCAGGAGCTTGGTTTCCAGGCCATAGAGGTAAATGCTAGTGACAGCCGTGGAAAAGCTAATAGCAAAATTGAAAACGGTGTTGGTGGAAGCATTGCAAATTCAATCAAAGAACTTTATACCAATACGGCCTATGTTGCAAATATGGATCGGCCAAAGCATTCTAAAACTGTGCTCATTATGGATGAGGTTGATGGAATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGTATCAAGATATCAAAAGTTCCTGTTATCTGCATTTGCAATGACCGTTACAGCCAGAAACTGAAAAGTCTTGTGAACTACTGTTTGCTTCTTAGCTTTCGGAAACCTACAAAGCAACAGATGGCCAAGAGGTTGATGGATGTTGCAAAGGCAGAAGGGCTTCAAGTTAATGAGATTGCTCTGGAGGAACTAGCAGAAAGAGTTAATGGAGATATGCGAATGGCACTGAACCAGTTGCAATATATGAGCCTCTCCATGTCATCTATTAATTACGATGATATCAGGCAGCGCTTTCTTACCAGCTCAAAGGATGAAGACATATCACCATTCACAGCTGTTGATAAGCTCTTCGGTTTTAATGCTACGAAGATGAGAATGGATGACAGGATTAGTCTTAGCATGAGTGATCCCGATCTTGTTCCACTTCTTATCCAGGAAAATTATATCAATTATAGACCAAGCTCAGCTGGTAAGGATGACCAGGGGATAAAACGCATGAACCTCATTGCCCGTGCTGCTGAGTCAATTGCTGATGGGGATCTAGTGAATGTACAGATTCGAAGATATCGACAGTGGCAGCTCTCTCAGACTAGTTCTGTGGCCTCGTCTATCATTCCGTTTGGTGGGTGGCTTGGAAAGAACTCAACTGCAGGCAAAAACCTGAGGCTTATGGAAGATCTGCATGTCCACATGCTTGCTTCACGTGAATCTAGTTCAGGAAGGGACACTATCCGATTGGAATACCTTACTCTTCTCCTTAAACAATTAACAGAACCACTGCGAACTCTGCCCAAGGCTGAAGCTGTCGAGAAAGTTGTGGAGTTTATGAATACATATTCTATCAGCCAGGAAGACTTCGACACTATTATAGAGTTATCAAAATTCAAGGGTCACCCTAATCCAATGGAAGGCATACAGCCTGCTGTTAAGTCAGCCTTAACAAAAGCATACAAAGAGCAAAGCAAATCAAGGATGGTTCGAGCTGCGGATCTAGTAAATCTTCCTGGAATAAAGAAGGCCCCTAAGAAGCGCATTGCTGCTATTTTAGAACCAGCTGAAGAAGTGGCAGAGCAGGGCGAAGGTAATGCACTGGATGAGAGTGAAGAAGAGAACACTTCCGACACAGAGGAGTTGGATGTCACCAAACCGGGTGAGAAGTTGAAGTCGGAACTTCAAAGTTTGAACTCAAAGGGCATGCAAGTACAACTGGAGCTGAAGGGGGAGGCGAATTCGAGTTCCAAGAAGGCATCTGGTGGCAAAGGTTCTGCACAGAAGGGTGGCCAAACTTCAAGGGCTGCTCCGAAAAGAAAGAGGTGA 2781 0.4455 MTDIRKWFMKSHDKGNANASSKPTTEKPQSDKPASGGQESSGRRKTSKYFSTDKQKGKDEKETLELPAKRKNIKDSGELPEPRASKKIHEAEEDEGDDYALPTNKKNSADATPTKKLKSGSGRGIPQKSVDVEENDEDDKKEAAASVKSAGRGRGGRGASAQPSGGRGRGGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSEKAKELGTKFLTEDGLFDMIRASKPAKAPSQEPKKSVDNKPATNASQSKSPAKVESKPILSSRLPSIPAKPKTAATVHSSLMWTEKYRPKDPKDVIGNQSLVSQLRNWLKTWNEQFLNTGSKKKGKKPNDPNSKKAVLLSGTPGIGKTTSAKLVCQELGFQAIEVNASDSRGKANSKIENGVGGSIANSIKELYTNTAYVANMDRPKHSKTVLIMDEVDGMSAGDRGGVADLIASIKISKVPVICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMDVAKAEGLQVNEIALEELAERVNGDMRMALNQLQYMSLSMSSINYDDIRQRFLTSSKDEDISPFTAVDKLFGFNATKMRMDDRISLSMSDPDLVPLLIQENYINYRPSSAGKDDQGIKRMNLIARAAESIADGDLVNVQIRRYRQWQLSQTSSVASSIIPFGGWLGKNSTAGKNLRLMEDLHVHMLASRESSSGRDTIRLEYLTLLLKQLTEPLRTLPKAEAVEKVVEFMNTYSISQEDFDTIIELSKFKGHPNPMEGIQPAVKSALTKAYKEQSKSRMVRAADLVNLPGIKKAPKKRIAAILEPAEEVAEQGEGNALDESEEENTSDTEELDVTKPGEKLKSELQSLNSKGMQVQLELKGEANSSSKKASGGKGSAQKGGQTSRAAPKRKR 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181289g00022 926 MobiDBLite consensus disorder prediction 841 926 - -
Stsc181289g00022 926 Pfam BRCA1 C Terminus (BRCT) domain 199 274 IPR001357 -
Stsc181289g00022 926 MobiDBLite consensus disorder prediction 129 147 - -
Stsc181289g00022 926 CDD HLD_clamp_RFC 524 582 - -
Stsc181289g00022 926 PIRSF RFC1 8 907 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Stsc181289g00022 926 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 17 903 - -
Stsc181289g00022 926 ProSiteProfiles BRCT domain profile. 197 278 IPR001357 -
Stsc181289g00022 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 584 IPR027417 -
Stsc181289g00022 926 MobiDBLite consensus disorder prediction 278 327 - -
Stsc181289g00022 926 Gene3D - 524 594 - -
Stsc181289g00022 926 FunFam Replication factor C subunit 1 524 595 - -
Stsc181289g00022 926 FunFam Replication factor C subunit 1 335 523 - -
Stsc181289g00022 926 MobiDBLite consensus disorder prediction 181 196 - -
Stsc181289g00022 926 MobiDBLite consensus disorder prediction 1 200 - -
Stsc181289g00022 926 FunFam Replication factor C subunit 1 173 276 - -
Stsc181289g00022 926 Pfam Replication factor RFC1 C terminal domain 664 806 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Stsc181289g00022 926 Gene3D BRCT domain 174 276 IPR036420 -
Stsc181289g00022 926 Pfam ATPase family associated with various cellular activities (AAA) 391 503 IPR003959 GO:0005524|GO:0016887
Stsc181289g00022 926 SUPERFAMILY post-AAA+ oligomerization domain-like 595 720 IPR008921 GO:0003677|GO:0006260
Stsc181289g00022 926 MobiDBLite consensus disorder prediction 290 309 - -
Stsc181289g00022 926 SUPERFAMILY BRCT domain 197 278 IPR036420 -
Stsc181289g00022 926 CDD BRCT_RFC1 197 275 - -
Stsc181289g00022 926 CDD AAA 386 524 - -
Stsc181289g00022 926 MobiDBLite consensus disorder prediction 373 395 - -
Stsc181289g00022 926 Gene3D - 335 523 IPR027417 -
Stsc181289g00022 926 MobiDBLite consensus disorder prediction 14 45 - -
Stsc181289g00022 926 MobiDBLite consensus disorder prediction 847 863 - -
Stsc181289g00022 926 MobiDBLite consensus disorder prediction 46 101 - -
Stsc181289g00022 926 MobiDBLite consensus disorder prediction 876 917 - -
Stsc181289g00022 926 SMART BRCT_7 199 277 IPR001357 -
Stsc181289g00022 926 SMART AAA_5 387 525 IPR003593 GO:0016887
Stsc181289g00022 926 Gene3D - 596 704 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181289g00022 1 886 Core DNA Replication Machinery Family AT5G22010 67.065 0.0 1085
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181289g00022 K10754 - gmx:100790070 1346.26