Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181289g00019 ATGTTTAACGGAATGATGGATCCTGATTTGATCAGAATCGCTCAGGAACAGATGAGTCGCATGTCACCCGCTGAGTTGGCTCGGATCCAACAACAGATGATGTCAAATCCTGATCTGATGAGGATGGCTTCAGAGAGCATGAAGAACATGAAGCCAGAAGACTTCAAACTCGCTGCAGAGCAGTTAAAGCATACTCGTCCCGAAGATATGGCCGAGATCGGTGAGAAGATGGCTAATGCATCACCTGATGAAATGGCAGCCATGCGAGCCCGTTTTGATGCCCAGATTAAATATCAACTGAGTGCAGCTGAGTTGTTGAAGAAACAGGGCAATGAGCTTCATAACAAGGGACAGTTCACAGATGCTTTGGAGAAGTACTCTCGTGCTAAGGAAAATATTAAAGAGATTCCGTCTTCTGAAAGTAGAAAACTTCTTTTGGCATGCTCACTCAACTTGATGTCCTGCTACCTAAAGACGAAGCAGTACAATGAATGCATAAAAGAAGGTTCTGAGGTTTTGGCATATGATGCAAACAATCTTAAGGCTCTTTATCGGAGAGGTCAAGCATATAAAGAACTGGGTTTCCTAAGGGATGCTGTTACTGATTTGAGCAAAGCACTTGAAGTGTCTCCTAATGATGATACAATTGAAGAGCTTTTACGGGACACCAAGGAAATGTTGACAACGGAAGGTGGTGACCGTGCTCCTGGAGGATTAGTAATTGAAGAAATCACTGAAGAAATTGAGAATGTACCTTCTGGAAACAATAAAAGCTCTTCTTCAGGACAAAAGGTGGTTCATCCAAGCAAGTTCGGTGAATCCTCTAATAGTTCTAGTACAGTAAATGGATATTCAAAAACAAATGCCGAGAGTATAGATAGGTTGAAAAATGATCCAGTAGCTATGAGATCATTCCAAAACTTCATTTCAAATGCCGATCCTGCTACTCTGGCTTCTTTAAATCCTGGACAATCCAATGATATATCTCCAGAGATGATGAGAACTGCTACGAATATGATTGGCAAGATGTCTCCTGAGGAACTTCAGAAAATGCTTGAAATGGCTTCTTCATTCCAAGGGGACAACCCGATTTTAAGGGGAGGTTCCTCCTCCAATTCCCCTTTTAACCCTGGATCAATTCCTCCCAACATATCACCTGATATGTTAAAAACAGCAAGTGATATGATAGGTAAAATGCCGCCAGATGAGCTTCAGAAGATGTTTGAAATGGCTTCCTCATTGAATGGGAGAGGATCTGTTCCATTGTCAACCCCTGTAGACAATACTGAAAGTTCTTCCCGGTCGGACTTACCATACTCAAGTACTAGTAGAACTAGTATTTCTGGAGAGTCAAGTTCTTCGCAAAATGTCTTTCCAAATATGAAAAGTGCTTCTCAGCCAAACTTCCCTTCCTCGACGACAGATTTGCAAGAACAAATGAGAAATCAGATGAAGGATCCAGCTATGCGTCAGATGTTCTCATCAATGATTAAAAATATGAGTCCAGAAATGATGGCAAACATGGGTGAACAATTTGGTTTCAAGCTTTCACCCGAGGACGCAGCAAGAGCTCAGGAAGCCATGTCATCCTTATCGCCGGAAAGCTTGGATAAAATGATGGTTTGGGCAGACAGGGTTCAAAGAGGAGTTGAAGGTGCAAAAAAGACGAAGAACTGGCTGCTAGGGAAACCTGGCATGATCTTGGCAATATGCATGCTCATTTTGGCTATCATTCTTCACCGATTCGGCTTCATTGGTAGCTAG 1764 0.424 MFNGMMDPDLIRIAQEQMSRMSPAELARIQQQMMSNPDLMRMASESMKNMKPEDFKLAAEQLKHTRPEDMAEIGEKMANASPDEMAAMRARFDAQIKYQLSAAELLKKQGNELHNKGQFTDALEKYSRAKENIKEIPSSESRKLLLACSLNLMSCYLKTKQYNECIKEGSEVLAYDANNLKALYRRGQAYKELGFLRDAVTDLSKALEVSPNDDTIEELLRDTKEMLTTEGGDRAPGGLVIEEITEEIENVPSGNNKSSSSGQKVVHPSKFGESSNSSSTVNGYSKTNAESIDRLKNDPVAMRSFQNFISNADPATLASLNPGQSNDISPEMMRTATNMIGKMSPEELQKMLEMASSFQGDNPILRGGSSSNSPFNPGSIPPNISPDMLKTASDMIGKMPPDELQKMFEMASSLNGRGSVPLSTPVDNTESSSRSDLPYSSTSRTSISGESSSSQNVFPNMKSASQPNFPSSTTDLQEQMRNQMKDPAMRQMFSSMIKNMSPEMMANMGEQFGFKLSPEDAARAQEAMSSLSPESLDKMMVWADRVQRGVEGAKKTKNWLLGKPGMILAICMLILAIILHRFGFIGS 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181289g00019 587 SMART tpr_5 180 213 IPR019734 GO:0005515
Stsc181289g00019 587 SMART tpr_5 146 179 IPR019734 GO:0005515
Stsc181289g00019 587 SMART tpr_5 103 136 IPR019734 GO:0005515
Stsc181289g00019 587 MobiDBLite consensus disorder prediction 363 399 - -
Stsc181289g00019 587 MobiDBLite consensus disorder prediction 415 478 - -
Stsc181289g00019 587 Gene3D Tetratricopeptide repeat domain 89 231 IPR011990 GO:0005515
Stsc181289g00019 587 MobiDBLite consensus disorder prediction 363 378 - -
Stsc181289g00019 587 SUPERFAMILY TPR-like 92 222 IPR011990 GO:0005515
Stsc181289g00019 587 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Stsc181289g00019 587 MobiDBLite consensus disorder prediction 416 478 - -
Stsc181289g00019 587 PANTHER TPR_REGION DOMAIN-CONTAINING PROTEIN 4 373 - -
Stsc181289g00019 587 MobiDBLite consensus disorder prediction 249 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181289g00019 Stsc-Chr181289 88418 92973 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181289g00019 92 227 Calmodulin-binding Proteins AT5G48570 33.803 5.77e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181289g00019 - - gmx:100800315 827.009