Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181288g00011 ATGATGGAACAAGTTGAGAATTTCCCAAGTTTCAGGTCTTCCATGAACAATTCATCAAGGAACTCAACGAGGGAAGTGACTTTTGGCCACTCAGGATCCAAGAATGTGAGGTATGGGTCAAAGGGTGCTGCTGACTCTGGACCTTTTAGCATGTCTCAGAAGGAAATCAGTGATGAGGATGCAAGATTGGTGTATGTTGATGATCCTGATAGGACAAATCAGAGGTACGAATTTTCCGGGAATTCCATTCGGACTAGCAAGTACTCAATTATCACATTTCTTCCAAGGAACTTGTTTGAACAGTTTCATAGAGTTGCTTACATTTACTTTCTCATAATTGCAATCCTTAATCAGCTGCCTCAGCTTGCTGTTTTCGGTAGAGGTGTTTCGGTTTTGCCACTGGCATTTGTTTTGTTTGTTACTGCTGTTAAGGATGCTTTTGAGGACTGGAGGAGGTATAAATCGGACAAAGTCGAGAATAACCGGATTGCGACCGTTATGGTTGACGGCCGGTTTCAAGGGAAGAAGTGGAAGGATGTAAGAGTTGGTGAGATCATTAAGATTTCGGCAAACGAAACCCTCCCTTGTGATATTGTGTTGCTCTCAACTAGTGACCCTACTGGGGTTGCTTATGTGCAGACTATTAACCTTGATGGAGAGTCTAATTTGAAGACTCGGTATGCGAAACAAGAGACTCAAGCAAAGGTGCCGGAGAAGGAGAGGTTTATTGGGTTGATTAAGTGTGAGAAGCCAAATAGGAACATATATGGATTTCAGGGTAACATGGAAGTTGATGGGAAGAGGTTGTCACTTGGGTCCTCCAATATTGTCCTTAGAGGCTGTGAACTCAAGAATACTAATTGGGCGGTTGGTGTTGCCGTGTATTGTGGCCGCGAGACCAAAGCAATGCTCAACAACTCAGGTGCTCCATCGAAGAGGAGCCAGCTTGAGACTCACATGAACTTGGAGATCATTATGCTTTCTGTCTTTCTTGTAACGTTGTGTACAGTCACCTCGGTGTGTGCCGCTGTTTGGTTGAAGATCCACAAGAGTGAGCTGGATTTGTTGCCTTATTACAGGAAACTAGATTTTTCAGAAGGTGAAAGAGAAAGCTATGAATATTATGGATGGGGATTGGAAATCCTTTTTACCTTCCTTAAGTCAGTTATAGTGTTCCAGGTCATGATCCCCATATCCTTGTACATATCCATGGAGCTTGTCCGTGTTGGTCAGGCATATTTCATGAGCCGGGACTCAAGAATGTATGATGCAGCAACAGATTCAAGATTTCAGTGCAGGGCACTGAACATTAATGAAGACTTAGGCCAAATTAAATATGTCTTCTCTGACAAAACTGGTACACTTACTGAGAACAAGATGGAGTTCCAATGTGCGAGCATCTGGGGGGTCGATTACAGCTCCACGGAACCGAGTTTGGAGCTTGGGCAACAAGCTGAATGCTTTTCTCAAGTGGATGGAAAGGTCTTGAAGCCAAAGATGAAGGTGAAGGTCAATCAAGAGCTTTTGCAGTTATCAAAAAATGGATTTAGAGACGTTGAGGGAAAACAAATATATGATTTTTTCTTAGCACTTGCAGCCTGCAATACAATTGTACCTCTTCTTGTTGATACATCTGATCCTACAGTTAAGCTGATAGATTACCAAGGAGAATCTCCAGATGAGCAAGCATTGGCATATGCTGCTGCTGCCTATGGCTTCATGCTCATAGAACGAACCTCAGGTCACATAGTCATTGATATTCATGAAAAAAGACAAAGGTTCAATGTCTTGGGTTTGCATGAATTCGACAGTGATCGAAAGCGGATGTCAGTTATCTTGGGGTACACAGACGATTCTGTGAAACTTTTTGTAAAAGGAGCAGATACATCCATGCTTAGTGTGATAGATAAATCATTGAACACTGAAATATTACAAGCAACTGAAACCCATCTTTACTCTTACTCGTCCCTGGGTTTGAGGACACTTGTTATCGGAATGCGGGAGCTGAGTGTGTCAGAATTCGATCAATGGCACTTTGCCTTTGAAGCAGCAAGTACTTCTTTGATCGGAAGGGCTGCCATGCTTCGCAAGGTTGCTAGCAATGTAGAGAATAATCTGTGCATATTGGGTGCAACTGCTATTGAAGATAAACTGCAGAAAGGAGTACCAGAATCTATCGAGTCTCTAAGGACTGCGGGTATTAAAGTATGGGTCTTGACTGGGGACAAACAGGAAACTGCCATATCAATTGGCTACTCCTCGAAGCTCCTAACAAACCACATGACTCAAATTATAATCAATAGCAACAATAGAGAGTCCTGTAGAAGACATTTACGGAATGCTCTTGTCAAGTCTAGACAACCATTGGCTGCATCTACAGTTTCCAACGATTCTGAAGGAATTTCTGATACTATTGCTACACCGATATCCTTGATTATTGACGGTACAAGCCTTGTGTATATTCTTGACAGTGAACTTGAAGAAGAGCTCTTTGAACTTGCAAGTAGATGTTCTGTTGTTCTCTGTTGTCGAGTGGCTCCATTACAAAAGGCTGGAATTGTTGCCCTTGTGAAGAAAAGGACGGCTGACATGACTCTAGCCATTGGAGATGGTGCTAATGATGTCTCGATGATCCAAATGGCTGATGTTGGATTGCTTTTCTATTTCTGGGTAGCTTTAATCCTCCAAATTTTGAACACTTGCTTATTTATTGTGTCTTTGTTTTTCAGGTATGTGCTTTTCACTGCCTACACTGTGACAACTGCTATAAATGAATGGAGCAGCATGTTGTATTCAGTAATCTACACAGCATTCCCGACAATTGTAGTTGGTATTCTTGACAAGGATCTTAGCAAAAGGACTCTCCTAAAGTATCCTCAGCTTTATGGAGCCGGGCAAAGAAGAGAGGCCTACAATAAAAAATTGTTTTGGGTGACAATGGCTGATACCTTTTGGCAAAGCATTGTTGTCTTCTTTGTTCCCCTCTTTGCATATTGGGGAACCACTGTAGATATATCAAGCATAGGAGATCTTTGGATACTTTCAGTGGTTATTTTGGTTAATTTGCACTTGGCTATGGACGTCATCAGGTGGAATTGGGTTATTCATGCAGTCATTTGGGGCTCTATTGTTGCAACTATCATTTGTGTAATGGTCATCGATGCCATACCGACGTTTTCTGGATACTGGGCCATATTTCATGCAGCAGGCACTGGATTGTTCTGGTTATGTTTGATAGGAATCTTGATAGCAGCGTTGCTTCCTCGTTTCGTTGTGAAATATATTTGTCAATATTACTACCCCAATGATATTCAGATCTCACGAGAAGCTGAGAAATTTGAGAATCAGCGAGTCAACGGCGGCGGCGGCAGCGGCAGCGGCAGCAGACAAATAGAACTGTATCCCATCCCTGTCGGTCCGCCGAGATGA 3429 0.4252 MMEQVENFPSFRSSMNNSSRNSTREVTFGHSGSKNVRYGSKGAADSGPFSMSQKEISDEDARLVYVDDPDRTNQRYEFSGNSIRTSKYSIITFLPRNLFEQFHRVAYIYFLIIAILNQLPQLAVFGRGVSVLPLAFVLFVTAVKDAFEDWRRYKSDKVENNRIATVMVDGRFQGKKWKDVRVGEIIKISANETLPCDIVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETQAKVPEKERFIGLIKCEKPNRNIYGFQGNMEVDGKRLSLGSSNIVLRGCELKNTNWAVGVAVYCGRETKAMLNNSGAPSKRSQLETHMNLEIIMLSVFLVTLCTVTSVCAAVWLKIHKSELDLLPYYRKLDFSEGERESYEYYGWGLEILFTFLKSVIVFQVMIPISLYISMELVRVGQAYFMSRDSRMYDAATDSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSSTEPSLELGQQAECFSQVDGKVLKPKMKVKVNQELLQLSKNGFRDVEGKQIYDFFLALAACNTIVPLLVDTSDPTVKLIDYQGESPDEQALAYAAAAYGFMLIERTSGHIVIDIHEKRQRFNVLGLHEFDSDRKRMSVILGYTDDSVKLFVKGADTSMLSVIDKSLNTEILQATETHLYSYSSLGLRTLVIGMRELSVSEFDQWHFAFEAASTSLIGRAAMLRKVASNVENNLCILGATAIEDKLQKGVPESIESLRTAGIKVWVLTGDKQETAISIGYSSKLLTNHMTQIIINSNNRESCRRHLRNALVKSRQPLAASTVSNDSEGISDTIATPISLIIDGTSLVYILDSELEEELFELASRCSVVLCCRVAPLQKAGIVALVKKRTADMTLAIGDGANDVSMIQMADVGLLFYFWVALILQILNTCLFIVSLFFRYVLFTAYTVTTAINEWSSMLYSVIYTAFPTIVVGILDKDLSKRTLLKYPQLYGAGQRREAYNKKLFWVTMADTFWQSIVVFFVPLFAYWGTTVDISSIGDLWILSVVILVNLHLAMDVIRWNWVIHAVIWGSIVATIICVMVIDAIPTFSGYWAIFHAAGTGLFWLCLIGILIAALLPRFVVKYICQYYYPNDIQISREAEKFENQRVNGGGGSGSGSRQIELYPIPVGPPR 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181288g00011 1142 FunFam Phospholipid-transporting ATPase 553 686 - -
Stsc181288g00011 1142 MobiDBLite consensus disorder prediction 1117 1142 - -
Stsc181288g00011 1142 Pfam Phospholipid-translocating P-type ATPase C-terminal 902 1102 IPR032630 -
Stsc181288g00011 1142 PRINTS P-type cation-transporting ATPase superfamily signature 448 462 - -
Stsc181288g00011 1142 PRINTS P-type cation-transporting ATPase superfamily signature 732 742 - -
Stsc181288g00011 1142 PRINTS P-type cation-transporting ATPase superfamily signature 855 867 - -
Stsc181288g00011 1142 SUPERFAMILY Calcium ATPase, transduction domain A 161 302 IPR008250 -
Stsc181288g00011 1142 MobiDBLite consensus disorder prediction 1 54 - -
Stsc181288g00011 1142 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 454 722 IPR023299 GO:0000166
Stsc181288g00011 1142 Gene3D - 705 888 IPR023214 -
Stsc181288g00011 1142 Gene3D - 138 305 - -
Stsc181288g00011 1142 Gene3D - 550 685 IPR023299 GO:0000166
Stsc181288g00011 1142 SUPERFAMILY Calcium ATPase, transmembrane domain M 74 1101 IPR023298 -
Stsc181288g00011 1142 MobiDBLite consensus disorder prediction 7 34 - -
Stsc181288g00011 1142 NCBIfam phospholipid-translocating P-type ATPase 78 885 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Stsc181288g00011 1142 SUPERFAMILY HAD-like 435 887 IPR036412 -
Stsc181288g00011 1142 NCBIfam HAD-IC family P-type ATPase 380 469 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc181288g00011 1142 FunFam Phospholipid-transporting ATPase 136 305 - -
Stsc181288g00011 1142 SFLD C1.7: P-type atpase like 432 885 - -
Stsc181288g00011 1142 Pfam Phospholipid-translocating ATPase N-terminal 64 128 IPR032631 -
Stsc181288g00011 1142 FunFam Phospholipid-transporting ATPase 709 888 - -
Stsc181288g00011 1142 Pfam E1-E2 ATPase 162 406 - -
Stsc181288g00011 1142 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 901 1114 - -
Stsc181288g00011 1142 Pfam Cation transport ATPase (P-type) 557 633 - -
Stsc181288g00011 1142 SFLD p-type atpase 432 885 IPR044492 -
Stsc181288g00011 1142 ProSitePatterns E1-E2 ATPases phosphorylation site. 450 456 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181288g00011 Stsc-Chr181288 104045 110288 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181288g00011 13 1117 Primary Pumps ATPases AT5G04930 65.674 0.0 1547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181288g00011 K14802 - gmx:100784988 1749.95