Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181288g00008 ATGTTGGAACTACCAATACTCAAAATGTCATTTCGTTTAACCAAATTCGATTTCAGCCATTTTCGCTATTTTGCTGAGAAGCTGCAGCCGGAGCTGCTCGGCGGCGCAGTTGCTATTGTTGCCGTTGGCCTTACCGCCGCTTACTTTTACCGTCGGTTTACCAAAGTCCCAAAAAGATGCCTGGACCCGAACAACTTCAAAGAATTTGAACTTATAAAGAAGACCCAACTGAGCCATAACTCTGCAAGATTCAAATTTGCCCTTCCAACTCCTAACTCCGTATTGGGCCTTCCAGTCGGAAAAAATATTCTTGCCAGGGGAAGAGATAGCTTGGGAGAAGAGGTTATGAGATCATACACTCCAATCACCTTGGATTCCGATGTTGGCTACTTCGAATTAGTTGTTAAGATGTACCCAAATGGAAAAATGTCCCACCATTTTAGACAAATGAAAATTGGAGATAAGTTGGAGGTCAAGGGCCCCAAGGGGCGATTTAGTTACAAGCCTGGCCAAGTTCGGGCATTTGGAATGATTGCTGGAGGTTCAGGCATCACCCCAATGTTTCAGATTACAAGGGCCGTATTAGAAAATCCCAAGGATAAAACAATGATTTTCCTTTTATATGCCAATGTGACAGTGGACGATATTCTGTTAAAGCCCCCTAATGAGTGGAATGGTGGCGTTGGGTACATAACAAAGGAAATGATTCAAACCCATTGTCCTGCACCATCCAACGATATCCAGATACTGAAGTGCGGGCCACCACTCATGAATAATGCAATGACAACTTATCTTAATGCACTTGGCTACCAACCAAAGATGCAGTTCCAGTTTTAG 837 0.4361 MLELPILKMSFRLTKFDFSHFRYFAEKLQPELLGGAVAIVAVGLTAAYFYRRFTKVPKRCLDPNNFKEFELIKKTQLSHNSARFKFALPTPNSVLGLPVGKNILARGRDSLGEEVMRSYTPITLDSDVGYFELVVKMYPNGKMSHHFRQMKIGDKLEVKGPKGRFSYKPGQVRAFGMIAGGSGITPMFQITRAVLENPKDKTMIFLLYANVTVDDILLKPPNEWNGGVGYITKEMIQTHCPAPSNDIQILKCGPPLMNNAMTTYLNALGYQPKMQFQF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181288g00008 278 Gene3D Translation factors 59 157 - -
Stsc181288g00008 278 SUPERFAMILY Riboflavin synthase domain-like 57 169 IPR017938 -
Stsc181288g00008 278 Pfam Oxidoreductase FAD-binding domain 69 167 IPR008333 -
Stsc181288g00008 278 PRINTS Cytochrome B5 reductase signature 153 167 - -
Stsc181288g00008 278 PRINTS Cytochrome B5 reductase signature 117 124 - -
Stsc181288g00008 278 PRINTS Cytochrome B5 reductase signature 176 195 - -
Stsc181288g00008 278 PRINTS Cytochrome B5 reductase signature 95 106 - -
Stsc181288g00008 278 PANTHER NADH-CYTOCHROME B5 REDUCTASE 57 278 IPR001834 GO:0016491
Stsc181288g00008 278 FunFam NADH-cytochrome b5 reductase 59 158 - -
Stsc181288g00008 278 Pfam Oxidoreductase NAD-binding domain 177 219 IPR001433 GO:0016491
Stsc181288g00008 278 Pfam Oxidoreductase NAD-binding domain 220 261 IPR001433 GO:0016491
Stsc181288g00008 278 Gene3D - 158 219 IPR039261 -
Stsc181288g00008 278 Gene3D - 220 278 IPR039261 -
Stsc181288g00008 278 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 64 168 IPR017927 GO:0016491
Stsc181288g00008 278 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 156 273 IPR039261 -
Stsc181288g00008 278 CDD cyt_b5_reduct_like 69 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181288g00008 Stsc-Chr181288 68606 76702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181288g00008 54 278 NADPH P450 reductases AT5G17770 63.563 2.48e-118 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181288g00008 K00326 - gmx:100784114 414.075