Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181287g00018 ATGTTGATGCGAAGAACGGAACACTCGAAAGTCGAAACCCTTGCGAAGTTGAGAGAACTCACAAGTGAGATCACCGTTGCTTCAGAACTCTTCAGTTCAGCCATGGCAACCGCAAGGACCGTCAAGGACGTTTCGCCGCACGAGTTCGTGAAGGCATACGCCTCTCACTTGAAGCGATCTGGCAAGATGGAGCTGCCTGAGTGGACAGATATTGTGAAAACTGCAAAGTTTAAGGAACTGGCTCCTTATGATCCAGACTGGTATTATGTTAGAGCTGCCTCCATGGCAAGAAAGATCTATCTGAGAGGTGGTCTCGGTGTTGGTGCATTTAAGAGGATCTATGGTGGAAGTAAGAGAAATGGAAGCCGTCCCCCACATTTCTGCCGGAGCAGTGGCAGTATTGCCAGACACATCCTGAAACAATTGCAAAACATGAACATTATTGAGCAAGAGTTGAAAGGAGGTAGAAAAATCACTTCCAGTGGCCGACGGGATCTAGATCAAGTTGCTGGTCGCATTGTTGTTGCCCCTTGA 534 0.4794 MLMRRTEHSKVETLAKLRELTSEITVASELFSSAMATARTVKDVSPHEFVKAYASHLKRSGKMELPEWTDIVKTAKFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCRSSGSIARHILKQLQNMNIIEQELKGGRKITSSGRRDLDQVAGRIVVAP 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181287g00018 177 SMART Ribosomal_S19e_2 40 176 IPR001266 GO:0003735|GO:0005840|GO:0006412
Stsc181287g00018 177 SUPERFAMILY "Winged helix" DNA-binding domain 40 175 IPR036390 -
Stsc181287g00018 177 Gene3D - 17 176 IPR036388 -
Stsc181287g00018 177 Pfam Ribosomal protein S19e 40 174 IPR001266 GO:0003735|GO:0005840|GO:0006412
Stsc181287g00018 177 FunFam 40S ribosomal protein S19 36 177 - -
Stsc181287g00018 177 PANTHER 40S RIBOSOMAL PROTEIN S19 35 173 IPR001266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181287g00018 Stsc-Chr181287 141782 143494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181287g00018 35 177 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 83.916 1.01e-92 264