Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181287g00005 ATGGCTGCCGCAAAACCTCAGAGGACTCCACAGGAAGTGGAGGACATAATCATCCGCAAAATCTTCCTCGTCTCGATCACCGATTCCGCCGCCACCAACGCCGATTCTAGAGTCGTCTATCTCGAGCTCACGGCGGCGGAGATTCTTAGCGAAGGCAAGGAACTCCGCCTCTCGCGCGATTTGATGGAGCGAGTCCTCATTGATCGACTCTCCGGCGACTTTCCCGGCGTCGGAGAATCCCCGTTCCAGTACCTAACCGGTTGCTACCACCGCGCGCATGAGGAGGCCAAGAAAATCGCCAACATGAAGGACAAAACCCTCCGGTCGGAGATGGAGGCGGTGGTGAAGCAAGCCAAGAAGCTCTGCGTCTCATACTGCAGGATTCACCTCGGCAATCCGGAGCTGTTTTCGAACCGGAATCAAAATTCAGGTTCGGGAACAGCGTCGCCGCTGCTGCCGCTGATCTTCGCTGAGGTTGGCGGTGGCATTGACGCGTTCGGCGGTAGCAGTGGCGGTGGAGGGCCAAAGAGTCCGCCTGGGTTTCTGGAGGAGTTCTTTAGGGACTCGGATTTTGACAGCCTGGACCCAATCTTGAAAGGATTGTATGAGGAGCTGAGAGGAAGTGTGATGAAGGTTTCTGCTCTTGGGAACTTTCAGGACTCTTTGAGGGCTTTGTTGTTCTTGGTGAGATTCTCGGTTGGTGCAAAGTCACTTGTGAGCCACGAGTGGTGGATTCCCAAAGGGGTTTATATGAATGGTCGTGCCATTGAGATGACCAGCATTTTGGGTCCATTCTTTCACATTAGTGCTCTTCCTGATCAAACCTTTTTCAGGAGCCAGCCTGATGTTGGGCAACAGTGTTTTTCTGATGCATCAACTCGACGACCAGCAGATTTATTATCTTCATTCTCCACTATCAAAACTGTCATGAATAATTTGTATGATGGCCTCTATGAAGTTCTCTTTATTCTCCTTAAAAGTAAAGATACTCGTGATAGTGTACTTGAGTATCTTGCAGAGGTGATCAATATAAATGCATCCAGGGCTCATATACAGGTTGATCCTATAACTTGTGCAAGTTCAGGCATGTTTGTAAATCTCAGTGCTGTTATGCTTCATCTTTGTGAGCCATTTTTGGATGCAAATTTAACCAAAAGGAATAAAATTGATCCAAAATATGTACACCACTCGAACCGTTTGAAGCTAAGTGGGTTGACTGCTCTTCATGCATCATCCGAAGAAGTTACTGAATGGCTTAATAGCAATAAACGGGCTAATGGAAACAATCAAAATAATGATGGCCAGCAGCGCTTGGAACAATCTCAAGAAGCAAGTAGTTCTGGTAGTAATGGTGGTGAGCTTTCAAATGAAAATTCTGGACATGGTGAAAAGACGGAATACCATTTCATTTGTGAATGCTTCTTTATGACTGCAAGAGTGCTCAACTTGGGCCTTTTAAAAGCATTTTCTGATTTCAAACACTTAGTTCAGGATATTTCTAGATGTGAAGATGCTCTTTCAACACTCAAAGCCATGCAAGAGCAGTCTCCCACTCCCCAATTGCAATTAGATATAACTAGACTTGAGAAAGAATTGGAATCATACTCACAGGAAAAGCTTTGTTATGAAGCTCAAATATTGAGGGATAACACACTTATTCAGAATGCACTGTCCTTCTACCGTTTGATGATTGTTTGGTTGGTTAGCTTGGTTGGTGGATTTAAGATGCCTCTACCATCGAATTGCCCAATGGAATTTGCCACTATGCCTGAGCATTTTGTAGAAGATGCCATGGAACTTCTAATATTTGCTTCCCGGATTCCCAAGGCCTTAGATGGAGTTGTGCTGGATGAGTTTATGAACTTCATAATTATGTTTATGGCCAGCCCTGAATACATCAAAAATCCATATTTAAGGGCAAAGATGGTTGAAGTCTTGAACTGCTGGATGCCCCGTAGGAGTGGTTCATCTGCCACAGCTACTTTATTTGAAGGTCACCAACTGTCTCTAGAGTATCTTGTGAGGAATCTTCTAAAACTTTATGTTGACATTGAGTTCACCGGGTCTCACACACAGTTCTATGACAAATTTAACATCCGCCATAATATAGCCGAACTCCTTGAATACCTATGGCAGGTCCCTAGTCATCGTAATGCTTGGAGACAGATTGCTAAGGAAGAGGAAAAGGGTGTTTATCTGAATTTCTTAAACTTTCTGATTAATGATAGCATTTATCTTCTTGATGAAAGTCTGAACAAAATTCTTGAGCTAAAAGAGTTGGAGGCTGAAATGTCAAATACAACTGAATGGGAGCGACGGCCACTTCAAGAGAGGCAGGAGAGGACACGGTTATTCCATTCGCAAGAAAATATTATTCGGATAGATATGAAGTTGGCAAATGAAGATGTGAGTATGCTTGCATTTACGTCAGAGCAGATTACTGCTCCATTCCTACTTCTAGAGATGGTTGAAAGAGTGGCTAGTATGCTCAATTACTTTCTGCTGCAACTAGTGGGTCCCCAAAGAAGATCACTTAGTCTGAAAGATCCTGAGAAATATGAATTTCGTCCAAAGCATTTGCTTAAACAGATTGTGCACGTATATGTTCACCTGGCTAGAGGTGATTCAAATTCCATCTTCCCAGCTGCCATTTCCAAGGATGGTCGATCATACAATGATCAGTTGTTTAGTGCTGCAGCTGAGGTTCTTCATAGAATAGGCGAGGATGGGAGAATCATACAAGAATTCATTCAACTCGGTGCTAAGGCAAAAGTTGCAGCTTCAGAAGCCATGGATACTGAAGCTACCTTGGGAGAAATCCCAGATGAATTCCTTGATCCAATTCAATACACTTTAATGAAGGATCCTGTCATCTTACCTTCATCAAGGATTGTAGTCGATCGGCCTGTCATACAGAGGCACCTTCTTAGTGATAGCACGGACCCATTCAACCGATCCCATCTTACCTCAGACATGCTGATTCCTGATAATGAACTAAAAGCAAGAATAGAGGAGTTTGTCAAGTCTCAGGAAATGAAGAAACGTAGTGAAGGTTTAAGCATACAGAGCACCAAGGACACGATTCAGACCACAAATGGGGAAATGTTGATCGACTAG 3117 0.4395 MAAAKPQRTPQEVEDIIIRKIFLVSITDSAATNADSRVVYLELTAAEILSEGKELRLSRDLMERVLIDRLSGDFPGVGESPFQYLTGCYHRAHEEAKKIANMKDKTLRSEMEAVVKQAKKLCVSYCRIHLGNPELFSNRNQNSGSGTASPLLPLIFAEVGGGIDAFGGSSGGGGPKSPPGFLEEFFRDSDFDSLDPILKGLYEELRGSVMKVSALGNFQDSLRALLFLVRFSVGAKSLVSHEWWIPKGVYMNGRAIEMTSILGPFFHISALPDQTFFRSQPDVGQQCFSDASTRRPADLLSSFSTIKTVMNNLYDGLYEVLFILLKSKDTRDSVLEYLAEVININASRAHIQVDPITCASSGMFVNLSAVMLHLCEPFLDANLTKRNKIDPKYVHHSNRLKLSGLTALHASSEEVTEWLNSNKRANGNNQNNDGQQRLEQSQEASSSGSNGGELSNENSGHGEKTEYHFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDALSTLKAMQEQSPTPQLQLDITRLEKELESYSQEKLCYEAQILRDNTLIQNALSFYRLMIVWLVSLVGGFKMPLPSNCPMEFATMPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFIIMFMASPEYIKNPYLRAKMVEVLNCWMPRRSGSSATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTTEWERRPLQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLLEMVERVASMLNYFLLQLVGPQRRSLSLKDPEKYEFRPKHLLKQIVHVYVHLARGDSNSIFPAAISKDGRSYNDQLFSAAAEVLHRIGEDGRIIQEFIQLGAKAKVAASEAMDTEATLGEIPDEFLDPIQYTLMKDPVILPSSRIVVDRPVIQRHLLSDSTDPFNRSHLTSDMLIPDNELKARIEEFVKSQEMKKRSEGLSIQSTKDTIQTTNGEMLID 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181287g00005 1038 SUPERFAMILY RING/U-box 932 1012 - -
Stsc181287g00005 1038 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 939 1018 IPR013083 -
Stsc181287g00005 1038 ProSiteProfiles U-box domain profile. 939 1013 IPR003613 GO:0004842|GO:0016567
Stsc181287g00005 1038 FunFam Ubiquitin conjugation factor e4 a 939 1017 - -
Stsc181287g00005 1038 MobiDBLite consensus disorder prediction 422 460 - -
Stsc181287g00005 1038 Coils Coil 518 545 - -
Stsc181287g00005 1038 SMART Ubox_2 943 1006 IPR003613 GO:0004842|GO:0016567
Stsc181287g00005 1038 Pfam U-box domain 940 1011 IPR003613 GO:0004842|GO:0016567
Stsc181287g00005 1038 PANTHER UBIQUITINATION FACTOR E4 5 1015 IPR045132 GO:0000151|GO:0030433|GO:0034450
Stsc181287g00005 1038 MobiDBLite consensus disorder prediction 422 458 - -
Stsc181287g00005 1038 Pfam Ubiquitin elongating factor core 262 923 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Stsc181287g00005 1038 CDD RING-Ubox_UBE4A 942 1010 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181287g00005 Stsc-Chr181287 44015 50273 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181287g00005 1 1038 U-box Gene Family AT5G15400 76.263 0.0 1632