LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc181286g00023	ATGTTGCCATGGCATACCCGATTGAATATTGCTATTGACATTGCCAGTGCATTGGTATATCTTCACTCTAATGGCATTGTCCACTACCAGGTAACATCCCGCAATATTCTTCTAGACCAAAACTTTGGTGCAAAAGTTAAGAACTGTCTTGGATCATGGCAACTTGCCAGAGACCCTTCTGGTTTTGTTTCACATCAACTCAATTCGGTCCAAGGGAGAATAGGTTATGTTGATCCAGCATTGTTATTAGGTGGTGGCTTTTATCTTAACTTGAAGAATGACGTATATAGCTTTGGGGTGGTGTTGTGTGAGCTTTTATCATCCAAGCCCTCCTACTTGAGGTTGGACCCGGAGGACAAGAGGGACATGAATCTTTCTACTTTCACAATCAGTAAAATCGAAAACAATGCATTGGAGGAGATATTGGATCCAAGCCTTGGGTTTGAATCAGACCCTGCCATAAATCAGATGCTAACTTCTGTGGCAGTGCTAGCATATCAGTGCTTGATTTATGACGTGTCTCTAAGGCCATCCATGGCACAGGTTCTTGAGGGTTTGAAGGGCATCCGAGAACAGAGAAGGGACTTAAATTTGACTGCAGATTTCGAGTGCCAAACTCTGATATTAACGTTTTTCCGGGATTACATGAAGTCACAATTCCAAATCTACTCTTATGATGTGCTTGCAAAAGCAACTAACCATTTTGAGAATTATGTTGGGAAAGGAGGCTTTGGGACTGTTTACTATGGGAAGCTCCCACAAGGGTATGAAGTAGCAATCAAACGTTTCCATGAAAAGAAGGACAAAGCAACAAAGCAATTCACCAGAGAAATTGAGATCCTAAGTCTCATGCGCCATCAGAATCTCGTGTCACTTTATGGCCGCAGTTGTGATGACAGTGATGAACTCCTGTTAGTTTATGAGTATGTCTCCAATGGCTCTCTATCAACCTATCTCCATCGAAATTCTGGAAACAAACTACCATGGGCTACCAGATTAAATATTGCCATTGAGACTGCTTCTGCACTAGCCTATCTTCACCATTCTGGTATAATTCACCGGGATGTGAAACCCAGCAACATTCTCTTGGACAAAAACTTTTGTGCCAAAGTTGCAGATTTCGGGCTAGCGCGGTTTCTTCCACTAGTTTCCCAGGAGGATCTTTATTTTGTTAGTCATGTTTCTACTGCTCCTGTAGGGACCCCTGCTTATATGGATCCAGAGTACTTTGAATTCAATAAGGTCAGTGACAAAAGCGATGTATATAGCTATGGCATGGTTTTGTTTCAGCTGATATCATCCATGCCTTCCACTGTAAGGCAGGGGCCACAGCTTTTTACTTTGGCTAACTTTGCAATGGGAAAGATCTTGAACAATGAATTAGAAGAGCTTGTGGATCCTAGTCTTGGTTTTCACTCAGATAATAGTGTAATGAAAACTATAACTGCAGTGGCAGAGTTAGCATTTCAGTGTGTGCAGCATCCTAAAGAATTCAGGCCATCAATGAAGCAGGTCTTAGAGACACTGGAGGGCATAAAGCAAGGTTCTTGGGGGTTCAACCAGATAACATAG	1572	0.4224	MLPWHTRLNIAIDIASALVYLHSNGIVHYQVTSRNILLDQNFGAKVKNCLGSWQLARDPSGFVSHQLNSVQGRIGYVDPALLLGGGFYLNLKNDVYSFGVVLCELLSSKPSYLRLDPEDKRDMNLSTFTISKIENNALEEILDPSLGFESDPAINQMLTSVAVLAYQCLIYDVSLRPSMAQVLEGLKGIREQRRDLNLTADFECQTLILTFFRDYMKSQFQIYSYDVLAKATNHFENYVGKGGFGTVYYGKLPQGYEVAIKRFHEKKDKATKQFTREIEILSLMRHQNLVSLYGRSCDDSDELLLVYEYVSNGSLSTYLHRNSGNKLPWATRLNIAIETASALAYLHHSGIIHRDVKPSNILLDKNFCAKVADFGLARFLPLVSQEDLYFVSHVSTAPVGTPAYMDPEYFEFNKVSDKSDVYSYGMVLFQLISSMPSTVRQGPQLFTLANFAMGKILNNELEELVDPSLGFHSDNSVMKTITAVAELAFQCVQHPKEFRPSMKQVLETLEGIKQGSWGFNQIT	523

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc181286g00023	523	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	351	363	IPR008271	GO:0004672\|GO:0006468
	Stsc181286g00023	523	SMART	serkin_6	233	507	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc181286g00023	523	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	310	519	-	-
	Stsc181286g00023	523	SUPERFAMILY	Protein kinase-like (PK-like)	217	510	IPR011009	-
	Stsc181286g00023	523	CDD	STKc_IRAK	239	512	-	-
	Stsc181286g00023	523	ProSiteProfiles	Protein kinase domain profile.	1	189	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc181286g00023	523	SUPERFAMILY	Protein kinase-like (PK-like)	2	190	IPR011009	-
	Stsc181286g00023	523	Pfam	Protein tyrosine and serine/threonine kinase	235	509	IPR001245	GO:0004672\|GO:0006468
	Stsc181286g00023	523	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	219	515	IPR044652	GO:0004672
	Stsc181286g00023	523	Gene3D	Transferase(Phosphotransferase) domain 1	1	200	-	-
	Stsc181286g00023	523	Gene3D	Phosphorylase Kinase; domain 1	212	309	-	-
	Stsc181286g00023	523	Gene3D	Transferase(Phosphotransferase) domain 1	310	518	-	-
	Stsc181286g00023	523	ProSitePatterns	Protein kinases ATP-binding region signature.	239	261	IPR017441	GO:0005524
	Stsc181286g00023	523	ProSiteProfiles	Protein kinase domain profile.	233	512	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc181286g00023	523	Pfam	Protein kinase domain	9	184	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc181286g00023	Stsc-Chr181286	155187	158252	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc181286g00023	219	514	Receptor kinase-like Gene Family	AT1G25390	50.993	9.57e-91	288

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK_LRK10L-1	Stsc181286g00023		PK_Tyr_Ser-Thr	3.5e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc181286g00023	-		-	aip:107634816	907.131