Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181286g00022 ATGAGGTTGAGGTGTGCCCTTTTTGAGTACTGCTTTGCAGGCGCTACTTCTGATGCATTGACCGAGTTTGATATTAAGTCAAACTTACCAAACTTAGGTTATACTGAGCTTGCAAGTGCCACTCATCATTTTCATCCATCCAAGAAAATTGGAACTATAGCCTATCACAAGGTATATCACGGGATACTAGAAGATCTTCGTGAAGCTGCAATCCAACGCCTAACGGCAAGTGAATTCCAAAAAATTGAAAAGCATGTAGAAGGGTGCAGGAGCAGAATCTTAAGTTTTTTGGCGCACAAAAATGTGGTGTCTGTGTATGGGTACGGTTCTAATGGGAAAGAATTCCTGCTAGCACATGAGTACGTTCCAAATGGCACTCTTCATAATCATCTCCATGGCGGAGGATCAAAGCGCCTCATGTTGCCATGGCATACCCGATTGAATATTGCTATTGACATTGCCAGTGCATTGGTATATCTTCACTCTAATGGCATTGTCCACTACCAGGTAACATCCCGCAATATTCTTCTAGACCAAAACTTTGGTGCAAAAGTTAAGAACTGTCTTGGATCATGGCAACTTGCCAGAGACCCTTCTGGTTTTGTTTCACATCAACTCAATTCGGTCCAAGGGAGAATAGGTTATGTTGATCCAGCATTGTTATTAGGTGGTGGCTTTTATCTTAACTTGAAGAATGACGTATATAGCTTTGGGGTGGTGTTGTGTGAGCTTTTATCATCCAAGCCCTCCTACTTGAGGTTGGACCCGGAGGACAAGAGGGACATGAATCTTTCTACTTTCACAATCAGTAAAATCGAAAACAATGCATTGGAGGAGATATTGGATCCAAGCCTTGGGTTTGAATCAGACCCTGCCATAAATCAGATGCTAACTTCTGTGGCAGTGCTAGCATATCAGTGCTTGATTTATGACGTGTCTCTAAGGCCATCCATGGCACAGGTTCTTGAGGGTTTGAAGGGCATCCGAGAACAGAGAAGGGACTTAAATTTGACTGCAGATTTCGAGTGCCAAACTCTGATATTAACGTTTTTCCGGGATTACATGAAGTCACAATTCCAAATCTACTCTTATGATGTGCTTGCAAAAGCAACTAACCATTTTGAGAATTATGTTGGGAAAGGAGGCTTTGGGACTGTTTACTATGGGAAGCTCCCACAAGGGTATGAAGTAGCAATCAAACGTTTCCATGAAAAGAAGGACAAAGCAACAAAGCAATTCACCAGAGAAATTGAGATCCTAAGTCTCATGCGCCATCAGAATCTCGTGTCACTTTATGGCCGCAGTTGTGATGACAGTGATGAACTCCTGTTAGTTTATGAGTATGTCTCCAATGGCTCTCTATCAACCTATCTCCATCGAAATTCTGGAAACAAACTACCATGGGCTACCAGATTAAATATTGCCATTGAGACTGCTTCTGCACTAGCCTATCTTCACCATTCTGGTATAATTCACCGGGATGTGAAACCCAGCAACATTCTCTTGGACAAAAACTTTTGTGCCAAAGTTGCAGATTTCGGGCTAGCGCGGTTTCTTCCACTAGTTTCCCAGGAGGATCTTTATTTTGTTAGTCATGTTTCTACTGCTCCTGTAGGGACCCCTGCTTATATGGATCCAGAGTACTTTGAATTCAATAAGGTCAGTGACAAAAGCGATGTATATAGCTATGGCATGGTTTTGTTTCAGCTGATATCATCCATGCCTTCCACTGTAAGGCAGGGGCCACAGCTTTTTACTTTGGCTAACTTTGCAATGGGAAAGATCTTGAACAATGAATTAGAAGAGCTTGTGGATCCTAGTCTTGGTTTTCACTCAGATAATAGTGTAATGAAAACTATAACTGCAGTGGCAGAGTTAGCATTTCAGTGTGTGCAGCATCCTAAAGAATTCAGGCCATCAATGAAGCAGGTCTTAGAGACACTGGAGGGCATAAAGCAAGGTTCTTGGGGGTTCAACCAGATAACATAG 1989 0.4238 MRLRCALFEYCFAGATSDALTEFDIKSNLPNLGYTELASATHHFHPSKKIGTIAYHKVYHGILEDLREAAIQRLTASEFQKIEKHVEGCRSRILSFLAHKNVVSVYGYGSNGKEFLLAHEYVPNGTLHNHLHGGGSKRLMLPWHTRLNIAIDIASALVYLHSNGIVHYQVTSRNILLDQNFGAKVKNCLGSWQLARDPSGFVSHQLNSVQGRIGYVDPALLLGGGFYLNLKNDVYSFGVVLCELLSSKPSYLRLDPEDKRDMNLSTFTISKIENNALEEILDPSLGFESDPAINQMLTSVAVLAYQCLIYDVSLRPSMAQVLEGLKGIREQRRDLNLTADFECQTLILTFFRDYMKSQFQIYSYDVLAKATNHFENYVGKGGFGTVYYGKLPQGYEVAIKRFHEKKDKATKQFTREIEILSLMRHQNLVSLYGRSCDDSDELLLVYEYVSNGSLSTYLHRNSGNKLPWATRLNIAIETASALAYLHHSGIIHRDVKPSNILLDKNFCAKVADFGLARFLPLVSQEDLYFVSHVSTAPVGTPAYMDPEYFEFNKVSDKSDVYSYGMVLFQLISSMPSTVRQGPQLFTLANFAMGKILNNELEELVDPSLGFHSDNSVMKTITAVAELAFQCVQHPKEFRPSMKQVLETLEGIKQGSWGFNQIT 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181286g00022 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672|GO:0006468
Stsc181286g00022 662 Pfam Protein kinase domain 45 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181286g00022 662 Gene3D Phosphorylase Kinase; domain 1 351 448 - -
Stsc181286g00022 662 Gene3D Phosphorylase Kinase; domain 1 17 121 - -
Stsc181286g00022 662 Gene3D Transferase(Phosphotransferase) domain 1 449 657 - -
Stsc181286g00022 662 Gene3D Transferase(Phosphotransferase) domain 1 122 339 - -
Stsc181286g00022 662 SMART serkin_6 372 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181286g00022 662 SMART serkin_6 44 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181286g00022 662 ProSitePatterns Protein kinases ATP-binding region signature. 378 400 IPR017441 GO:0005524
Stsc181286g00022 662 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 358 654 IPR044652 GO:0004672
Stsc181286g00022 662 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 449 658 - -
Stsc181286g00022 662 SUPERFAMILY Protein kinase-like (PK-like) 356 649 IPR011009 -
Stsc181286g00022 662 Pfam Protein tyrosine and serine/threonine kinase 374 648 IPR001245 GO:0004672|GO:0006468
Stsc181286g00022 662 ProSiteProfiles Protein kinase domain profile. 44 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181286g00022 662 ProSiteProfiles Protein kinase domain profile. 372 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181286g00022 662 CDD STKc_IRAK 378 651 - -
Stsc181286g00022 662 SUPERFAMILY Protein kinase-like (PK-like) 26 325 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181286g00022 Stsc-Chr181286 155187 158334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181286g00022 358 653 Receptor kinase-like Gene Family AT1G25390 50.993 9.38e-89 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc181286g00022 Pkinase 9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181286g00022 - - aip:107634816 1131.32