Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181286g00016 ATGGACAAGGACAAATCATCCCACAGTTTTCTTCACAGTCTCGTCAAACACCTCAAATTCGGTTCCAATAAAGAGCGAAGCAATGAAGCTGAAATACAGCAAATGGCTGCGCAGGAGCAGAAGGTCTTTTCCTATGAAACTTTAGTTGCAGCTACCAAGAATTTCAGTGCTTTTAATAAGCTTGGTGAGGGAGGCTTCGGACCCGTTTACAAGGGGAAGCTGAGTGATGGGAGAGAGATAGCAGTAAAAAAGCTATCACGTACTTCAAATCAAGGGAAGAAAGAGTTCATGAATGAGGCCAAGTTATTAGCTCGTGTACAGCACCGGAATGTGGTGAATTTGTTGGGCTATTGTGCCCATGACAGAGAGAAGCTTCTTGTCTATGAGTATGTTCCTCATGAAAGCCTTGACAAACTTCTATTCAAGGCGCACAAGAAGGGGGAGCTAGATTGGAAAAGGAGGTTGGGGATAATAACAGGGGTGGCAAAGGGGTTGCTCTATCTTCACGAAGACTGTCACCATTGCATCATCCACCGTGACATCAAAGCTAGTAACATCTTGCTCGATGACAAATGGCAGCCGAAAATCGCAGACTTCGGCATGGCCCGACTCTTCCCTGAAGATCAGAGCCAGGTCAATACACGTGTTGCTGGAACCAATGGTTATATGGCACCCGAATATGTAATGCATGGACAACTGTCTGCCAAGGCTGACGTATTTAGCTATGGAGTGTTGGTGTTGGAGTTGATCAGTGGCCAAAGAAACTCTTCCTTCAATTTGGATGTTGATGCACAGAATCTACTTGATTGGGCATACAAGCTGTACAAGAAGGGGAGGAGCTTGGAAATTGTGGATTCCGTGTTAGCATCCACAGTGGAAGCAGAACAATTAGTTATGTGCATTCAGCTTGGTCTGCTCTGCACCCAGGGCGACCCGAAGCTGCGACCGGACATGAGGCGCATTGTGGTCATGCTGTCTAGGAAGCCAGGCCATATGGAAGAACCTACCAGACCGGGTGTGCCAGGTTCCAGATACAGGAGACGACCCAGGCAGCATGTTGGATTGTCCTCAGCCACTGCTGGTACCTCAGGTGCCTCAGATTCTCAGACTTCTGATTCAAGTAGCAACACAACCTCTGTTACTGCTACTACTCCAACTGCAACTAGAACTAGAACTAGAACTAGAACTAGAACAATAACAAACTCGGGTGTTGCGGAATCATCGGACCCAAGAGGGAAACAACCAATGGAGGAGGGTTTAGACTAA 1266 0.4708 MDKDKSSHSFLHSLVKHLKFGSNKERSNEAEIQQMAAQEQKVFSYETLVAATKNFSAFNKLGEGGFGPVYKGKLSDGREIAVKKLSRTSNQGKKEFMNEAKLLARVQHRNVVNLLGYCAHDREKLLVYEYVPHESLDKLLFKAHKKGELDWKRRLGIITGVAKGLLYLHEDCHHCIIHRDIKASNILLDDKWQPKIADFGMARLFPEDQSQVNTRVAGTNGYMAPEYVMHGQLSAKADVFSYGVLVLELISGQRNSSFNLDVDAQNLLDWAYKLYKKGRSLEIVDSVLASTVEAEQLVMCIQLGLLCTQGDPKLRPDMRRIVVMLSRKPGHMEEPTRPGVPGSRYRRRPRQHVGLSSATAGTSGASDSQTSDSSSNTTSVTATTPTATRTRTRTRTRTITNSGVAESSDPRGKQPMEEGLD 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181286g00016 421 MobiDBLite consensus disorder prediction 355 408 - -
Stsc181286g00016 421 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 24 382 - -
Stsc181286g00016 421 Gene3D Phosphorylase Kinase; domain 1 16 130 - -
Stsc181286g00016 421 FunFam Cysteine-rich receptor-like protein kinase 10 132 337 - -
Stsc181286g00016 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
Stsc181286g00016 421 FunFam Cysteine-rich receptor-like protein kinase 10 19 130 - -
Stsc181286g00016 421 ProSiteProfiles Protein kinase domain profile. 55 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181286g00016 421 SMART serkin_6 55 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181286g00016 421 Gene3D Transferase(Phosphotransferase) domain 1 131 335 - -
Stsc181286g00016 421 CDD STKc_IRAK 61 327 - -
Stsc181286g00016 421 SUPERFAMILY Protein kinase-like (PK-like) 40 338 IPR011009 -
Stsc181286g00016 421 MobiDBLite consensus disorder prediction 325 421 - -
Stsc181286g00016 421 Pfam Protein kinase domain 57 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181286g00016 Stsc-Chr181286 128467 132350 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181286g00016 43 339 Receptor kinase-like Gene Family AT4G11530 54.515 2.36e-113 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc181286g00016 Pkinase 4.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181286g00016 - - gmx:100795769 624.78