Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181286g00015 ATGGCTGCGCAGGAGCAGAAGGTCTTTTCCTATGAAACTTTAGTTGCAGCTACCAAGAATTTCAGTGCTTTTAATAAGCTTGGTGAGGGAGGCTTCGGACCCGTTTACAAGGGGAAGCTGAGTGATGGGAGAGAGATAGCAGTAAAAAAGCTATCACGTACTTCAAATCAAGGGAAGAAAGAGTTCATGAATGAGGCCAAGTTATTAGCTCGTGTACAGCACCGGAATGTGGTGAATTTGTTGGGCTATTGTGCCCATGACAGAGAGAAGCTTCTTGTCTATGAGTATGTTCCTCATGAAAGCCTTGACAAACTTCTATTCAAGGCGCACAAGAAGGGGGAGCTAGATTGGAAAAGGAGGTTGGGGATAATAACAGGGGTGGCAAAGGGGTTGCTCTATCTTCACGAAGACTGTCACCATTGCATCATCCACCGTGACATCAAAGCTAGTAACATCTTGCTCGATGACAAATGGCAGCCGAAAATCGCAGACTTCGGCATGGCCCGACTCTTCCCTGAAGATCAGAGCCAGGTCAATACACGTGTTGCTGGAACCAATGGTTATATGGCACCCGAATATGTAATGCATGGACAACTGTCTGCCAAGGCTGACGTATTTAGCTATGGAGTGTTGGTGTTGGAGTTGATCAGTGGCCAAAGAAACTCTTCCTTCAATTTGGATGTTGATGCACAGAATCTACTTGATTGGGCATACAAGCTGTACAAGAAGGGGAGGAGCTTGGAAATTGTGGATTCCGTGTTAGCATCCACAGTGGAAGCAGAACAATTAGTTATGTGCATTCAGCTTGGTCTGCTCTGCACCCAGGGCGACCCGAAGCTGCGACCGGACATGAGGCGCATTGTGGTCATGCTGTCTAGGAAGCCAGGCCATATGGAAGAACCTACCAGACCGGGTGTGCCAGGTTCCAGATACAGGAGACGACCCAGGCAGCATGTTGGATTGTCCTCAGCCACTGCTGGTACCTCAGGTGCCTCAGATTCTCAGACTTCTGATTCAAGTAGCAACACAACCTCTGTTACTGCTACTACTCCAACTGCAACTAGAACTAGAACTAGAACTAGAACTAGAACAATAACAAACTCGGGTGTTGCGGAATCATCGGACCCAAGAGGGAAACAACCAATGGAGGAGGGTTTAGACTAA 1164 0.4759 MAAQEQKVFSYETLVAATKNFSAFNKLGEGGFGPVYKGKLSDGREIAVKKLSRTSNQGKKEFMNEAKLLARVQHRNVVNLLGYCAHDREKLLVYEYVPHESLDKLLFKAHKKGELDWKRRLGIITGVAKGLLYLHEDCHHCIIHRDIKASNILLDDKWQPKIADFGMARLFPEDQSQVNTRVAGTNGYMAPEYVMHGQLSAKADVFSYGVLVLELISGQRNSSFNLDVDAQNLLDWAYKLYKKGRSLEIVDSVLASTVEAEQLVMCIQLGLLCTQGDPKLRPDMRRIVVMLSRKPGHMEEPTRPGVPGSRYRRRPRQHVGLSSATAGTSGASDSQTSDSSSNTTSVTATTPTATRTRTRTRTRTITNSGVAESSDPRGKQPMEEGLD 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181286g00015 387 ProSiteProfiles Protein kinase domain profile. 21 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181286g00015 387 CDD STKc_IRAK 27 293 - -
Stsc181286g00015 387 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 5 348 - -
Stsc181286g00015 387 MobiDBLite consensus disorder prediction 291 387 - -
Stsc181286g00015 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Stsc181286g00015 387 SMART serkin_6 21 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181286g00015 387 FunFam Cysteine-rich receptor-like protein kinase 10 1 96 - -
Stsc181286g00015 387 Gene3D Phosphorylase Kinase; domain 1 1 96 - -
Stsc181286g00015 387 Pfam Protein kinase domain 23 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181286g00015 387 FunFam Cysteine-rich receptor-like protein kinase 10 98 303 - -
Stsc181286g00015 387 MobiDBLite consensus disorder prediction 321 374 - -
Stsc181286g00015 387 Gene3D Transferase(Phosphotransferase) domain 1 97 301 - -
Stsc181286g00015 387 SUPERFAMILY Protein kinase-like (PK-like) 6 305 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181286g00015 Stsc-Chr181286 128467 132478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181286g00015 9 305 Receptor kinase-like Gene Family AT4G11530 54.515 1.08e-113 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc181286g00015 Pkinase 3.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181286g00015 - - gmx:100795769 577.785