Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181286g00006 ATGAAGAGGGAGCACCACCATCTAATTCCCAATCCACGCGATCCCTCATCCTCTTCCATGCCCACACCATCACCACCTTCATCTGCACCACAACCCACTTCCACCGCCGCCGGCGCTTATTCCGGTTACTCAATCCCCAACGGCTCAACCTCTGCCGGGAAATCCAAGCTGTGGGACGAGTGCGCGGCTGCTGACGGCGGCATGGACGAGCTCCTGGCGGTGGTTGGGTACAAGGTGAGGTCCTCCGATATGGCGGAAGTTGCGCAGAAGCTTGAGCAGCTGGAGGAAGCCATGGGGAACGCACAGGACGGAATCTCCCAGCTCTCCAACGATACTGTTCACTTCAACCCCGCAGATATCTCCAACTGGCTCGAAACGATGATCAGCAATCTAGACTTGCCGCCTCCTCCTCCTCCTCCTTTGCCGCAGCAGCACTCCGTCGACTCCTCATCCTCCTCCGCTGCTTTCCTCCCCCAAACTGAATCATCCACCATCACAACTTCCATGGATAGGGCCTTCGAGGACAGCTCCTCCTCCGACTACGACCTCAAGGCCATCGCAGCTAAGGCAATATACACCACCGCCTCAGCCTCCGCCGATTCCCTATCTCCTTCCTCCAAGCGCGTGAAACCCTCGCCTGCCGAGTCGTCTTCCTCGACTCGGCCACTCGTCCTGGTTGACTCGCAGGAGAATGGGATCCGACTCGTCCACACTCTCATGGCGTGCGCGGAGGCAGTCCACCAGAACAACCTGCCTCTCGCGGAGGCGCTCGTAAAGCGGATCGGGTTCTTGGCGGTGTCTCAGGTTGGAGCCATGCGCAAAGTAGCCACCTACTTCGCCGAAGCTCTCGCTCGCCGGATCTACGGTCTATACCCGGAAAACCCGATCCAACATTCGTTCTCCGATATGCTTCAGATCCACTTCTACGAGACCTGTCCCTATCTCAAGTTCGCTCACTTCACAGCCAACCAAGCCATCCTCGAAGCGTTCCAGGGAAAGAATCGCGTCCACGTCATCGATTTCAGCATGAACCAGGGGATGCAGTGGCCAGCGCTCATGCAAGCCCTGGCTCTCCGTCCAGGAGGTCCGCCGGCGTTCCGTTTAACCGGAATCGGACCTCCGGCGGCGGACAACTCCGATCACTTGCAGGAAGTAGGTTGGAAACTAGCTCAATTAGCCGAAACGATCCACGTCGAGTTCGAGTACAGAGGATTCGTCGCCAACAGCTTGGCAGATCTTGACGCCTCGATGCTGGAGCTGAGGCCGAGTGATACCGAGTCGGTGGCGGTTAACTCAGTTTTCGAGCTGCACAAGCTGCTCGCTCGTCCCGGCGCGGTGGAGAAGGTTCTGTCAGTGGTGAGGCAGATCCGGCCGGAGATCGTGACGGTGGTGGAGCAGGAGGCGAACCACAATGGACCGGGTTTTCTGGACCGGTTCACGGAGTCGCTGCACTATTACTCCACCATGTTCGACTCGCTTGAAGGTTCGGTAAACTCGCAGGACAAGTTGATGTCGGAGGTGTACCTCGGGAAACAGATCTGCAACGTGGTGGCTTGCGAAGGGGTGGATCGGGTGGAGAGGCACGAGAGCCTGGGTCAGTGGCGTACCCGGTTTGGTTCTGCTGGGTTCGCACCGGTCCACTTGGGTTCAAATGCCTTCAAGCAAGCGAGCATGTTGCTAGCACTGTTTGCGGGTGGGGATGGTTACAGAGTGGAAGAGAATAACGGTTGCCTCATGCTTGGTTGGCATACTAGACCCTTGATTGCCACCTCTGCGTGGCAACTCGCCACCAAATCGGTGGTTGCTCACTGA 1812 0.5789 MKREHHHLIPNPRDPSSSSMPTPSPPSSAPQPTSTAAGAYSGYSIPNGSTSAGKSKLWDECAAADGGMDELLAVVGYKVRSSDMAEVAQKLEQLEEAMGNAQDGISQLSNDTVHFNPADISNWLETMISNLDLPPPPPPPLPQQHSVDSSSSSAAFLPQTESSTITTSMDRAFEDSSSSDYDLKAIAAKAIYTTASASADSLSPSSKRVKPSPAESSSSTRPLVLVDSQENGIRLVHTLMACAEAVHQNNLPLAEALVKRIGFLAVSQVGAMRKVATYFAEALARRIYGLYPENPIQHSFSDMLQIHFYETCPYLKFAHFTANQAILEAFQGKNRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNSDHLQEVGWKLAQLAETIHVEFEYRGFVANSLADLDASMLELRPSDTESVAVNSVFELHKLLARPGAVEKVLSVVRQIRPEIVTVVEQEANHNGPGFLDRFTESLHYYSTMFDSLEGSVNSQDKLMSEVYLGKQICNVVACEGVDRVERHESLGQWRTRFGSAGFAPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQLATKSVVAH 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181286g00006 603 MobiDBLite consensus disorder prediction 129 157 - -
Stsc181286g00006 603 Pfam GRAS domain family 235 594 IPR005202 -
Stsc181286g00006 603 Coils Coil 84 111 - -
Stsc181286g00006 603 MobiDBLite consensus disorder prediction 1 54 - -
Stsc181286g00006 603 SMART DELLA_2 69 141 - -
Stsc181286g00006 603 MobiDBLite consensus disorder prediction 200 223 - -
Stsc181286g00006 603 Pfam Transcriptional regulator DELLA protein N terminal 69 135 IPR021914 -
Stsc181286g00006 603 MobiDBLite consensus disorder prediction 31 54 - -
Stsc181286g00006 603 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 187 590 IPR005202 -
Stsc181286g00006 603 MobiDBLite consensus disorder prediction 16 30 - -
Stsc181286g00006 603 FunFam DELLA protein GAI 67 131 - -
Stsc181286g00006 603 Gene3D - 67 131 IPR038088 -
Stsc181286g00006 603 ProSiteProfiles GRAS family profile. 226 594 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181286g00006 Stsc-Chr181286 54396 56207 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181286g00006 38 597 GRAS Transcription Factor Family AT2G01570 66.275 0.0 754
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc181286g00006 GRAS 6.7e-137 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181286g00006 K14494 - qsa:O6P43_032550 867.455