Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181285g00001 ATGGCTGCTGCTTCTTCCTCTTCTTCTTCAAAGAAAGATTCATTGTTCCGTGGAATCCGGTGCCGGGGAGGAAAATGGGTATCTGAGATCCGGGAGCCGCGAAAGACGACAAGAATATGGCTCGGCACCTTTCTGAAACCGGAGATGGCTGCGGCAGCCTATGACGTGGCGGCACTGGCACTCAAGGGCGCAGAAGCGACCTTGAACTTCCCTACCATGGTAGGGAAGTATCCGGTGCCGGCTTCAAGCTCCGCAGCTGACATTCGCAGCGCTGCTACTGCAGCCGCGCAACTGATTATGGCTGAACTTGCATCGCCATCCAACAATAATAATGCGGTTGTTCAGCCTAATAATAGTGATAGTGAAAAAAATAACATTAATAATAACAGTAATAATGATAGTGCTGCTGCTCCTTTGGGTGATGAACCGTTTGAGTTTTTGGACGAGGAAGCCATTTTCTCCTTGCCGAGTTTGTTGGTTGATATGGCGGAGGGAATGCTGCTGTCTCCACCCAGGATGAGTTTGTCGTCGCCGGACTCGCCGCCTGAAAATTATTTCGGCGGAGACAATTTGTGGAACTACTAA 585 0.4991 MAAASSSSSSKKDSLFRGIRCRGGKWVSEIREPRKTTRIWLGTFLKPEMAAAAYDVAALALKGAEATLNFPTMVGKYPVPASSSAADIRSAATAAAQLIMAELASPSNNNNAVVQPNNSDSEKNNINNNSNNDSAAAPLGDEPFEFLDEEAIFSLPSLLVDMAEGMLLSPPRMSLSSPDSPPENYFGGDNLWNY 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181285g00001 194 Pfam AP2 domain 16 63 IPR001471 GO:0003700|GO:0006355
Stsc181285g00001 194 SMART rav1_2 15 77 IPR001471 GO:0003700|GO:0006355
Stsc181285g00001 194 MobiDBLite consensus disorder prediction 108 136 - -
Stsc181285g00001 194 SUPERFAMILY DNA-binding domain 14 72 IPR016177 GO:0003677
Stsc181285g00001 194 ProSiteProfiles AP2/ERF domain profile. 15 71 IPR001471 GO:0003700|GO:0006355
Stsc181285g00001 194 MobiDBLite consensus disorder prediction 108 140 - -
Stsc181285g00001 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 164 - -
Stsc181285g00001 194 Gene3D AP2/ERF domain 15 73 IPR036955 GO:0003700|GO:0006355
Stsc181285g00001 194 CDD AP2 14 71 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181285g00001 Stsc-Chr181285 10945 11573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181285g00001 2 194 AP2-EREBP Transcription Factor Family AT5G52020 51.282 3.99e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc181285g00001 AP2 5.8e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181285g00001 - - adu:107489031 244.973