Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181283g00028 ATGGCATCTTCTTCTTCTTCTTCTTCGGATGTTCCTGTAATCAAGCATGATGTCTTCATCAGTTTCAGAGGAGAAGACATCCGCGATCATTTCCTTAGCCATTTGAGAAAAGAATTCCGTCGTAACCAAATTGATTTCTTTCTTGATGATGAAAAGCTTCATCCTGGAGACGAGATTTCTTCCACTCTTGAGCTTGTGAAGATAACTGAATGCATGAAACAATATGAAAGGGTTGTGATACCTGTCTTTTACAACATTGATCCTTCTGATGTCAGGCATCAGAAACGAACTTTTGCAGAGGCTTTTGATGTCCACAAAGAAAGATATGATGAGGAAAATATGCAGAAATGGAGATCTGTTTTAAAGGAGGCTGCAAATTTATCTGGAATTCATTATCCTTCAAAATATCGAAATGAATCTGAACTGATCGAAGAAATTGTCAAGCATGTTTCGGAGAAATTGTCACATCTGTTTTCAAATGCATCTGAAAGCCATATTGGAATGGATGAAAATTTCAAACGTATCCAACCTTTATTGGCAATGGAGTCTAATGAAGTTCGATTTCTTGGAATTTGGGGTATGGGAGGGATTGGTAAAACAACAATTGCCAAAGCAATATTTGACAGATATTCCTCTCAATACGAAGGTTGCTGCTTTCTACAAAATGTAAGAGAAGAATCACAAAAGTCTAGTCCACATTACTTATATGAGAAACTTGTTTCTGAACTCCTTGAGGGGGAAAATCTCCTTGTGAAGGGATCAGCCCAATCAAGATCTATGTATGTCAAGAGAAGGTTGAGTGAAAAAAGGTTCTGA 816 0.3738 MASSSSSSSDVPVIKHDVFISFRGEDIRDHFLSHLRKEFRRNQIDFFLDDEKLHPGDEISSTLELVKITECMKQYERVVIPVFYNIDPSDVRHQKRTFAEAFDVHKERYDEENMQKWRSVLKEAANLSGIHYPSKYRNESELIEEIVKHVSEKLSHLFSNASESHIGMDENFKRIQPLLAMESNEVRFLGIWGMGGIGKTTIAKAIFDRYSSQYEGCCFLQNVREESQKSSPHYLYEKLVSELLEGENLLVKGSAQSRSMYVKRRLSEKRF 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181283g00028 271 SMART till_3 15 127 IPR000157 GO:0007165
Stsc181283g00028 271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 271 IPR027417 -
Stsc181283g00028 271 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 269 IPR044974 GO:0006952
Stsc181283g00028 271 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 129 IPR035897 -
Stsc181283g00028 271 ProSiteProfiles TIR domain profile. 14 154 IPR000157 GO:0007165
Stsc181283g00028 271 Gene3D - 156 271 IPR027417 -
Stsc181283g00028 271 Gene3D - 1 63 IPR035897 -
Stsc181283g00028 271 Pfam NB-ARC domain 174 271 IPR002182 GO:0043531
Stsc181283g00028 271 Gene3D - 64 155 IPR035897 -
Stsc181283g00028 271 Pfam TIR domain 63 160 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181283g00028 Stsc-Chr181283 160587 162896 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181283g00028 6 271 WRKY Transcription Factor Family AT4G12020 34.286 1.26e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181283g00028 - - ahf:112728390 410.223