Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181283g00025 ATGGCATCTTCTTCTTCTTCCTCCTCTGCCTCATCTTCTAATTCTTTCAATTTTCCTGAAATCAAATATGATGTGTTCATCAGTTTCAGAGGAGAAGACATCCGCACTAATTTTCTTAGCCATTTGAGAAAAGAATTGCGTCGTAACCAAATTGATTTCTTTCTTGATGATGAAAAGCTTCATCCTGGAAATGAGATTTCATCCACACTCCTTCGAGCAATAGAGCAATCATATATTTCATTGGTCGTCTTCTCGGAGAATTATGCTTCTTCGATATGGTGTATGGAGGAGCTTGTCAAGATTATTGAATGCATGAAACAATATCAAAGGATTGTCATACCAGTCTTTTACAATATTAATCCTTCTGATGTAAGGCATCAAAAAGGAACTTTTGCAGAGGCTTTTGATCTCCACAAAGAGAAATACAAGGAGGAAAACATGCAAAGGTGGAGATCGGTTTTAAACGAGACAGCAAATTTATCTGGAATTCATTATCCATCCAAATATGGAAATGAAGCAGAACTCATAGAAGATATTGTGAAAGTAATTTCGAAGAAATTATCGCATCCTTTTTCATATGCACCCGAAGACTATATCGGGATCAATGAAAACTTTAGATTTCTTCCACCTTTACTGGCAATGGAGTCTAATGAAGTACGATATGTGGGAATCTGGGGCATGGGAGGCATAGGTAAAACAACAATTGCTAGAGCAATATATACCAGATATGCCTCTCAATTCGAAGGATGCTGTTTTCTAGAAAATGCAACAGAAAAATGGCAAAAGTCTAGTTTACTTTGCTTATATGAGGATGTTATTTCTGAACTACTTGAAGGAGAACATCTCCTTGTGAAGGGATCATCCCAGGCAAGATTTGAGTATGTCAAGAGAAGGTTGAATCGGAAAAAGGTTCTCATAGTGTTTGACAGTGTGGATGCATTTGAGATGTTAGATTTTCCAAACAGAAACCAAATCTTCTTGGCACCAGGTAGTAGGGTTATTGTAACATCCAGAGACATGCAAATACTAATTGCTGCAAGGGTGCATGCAATATACAAGGTTCAGGGATTGAGTTTTAGAAGCTCCCTTAAGCTTTTTTGCTTAAATGCCTTCCACAAAAGCTATCCTGAAAATGGATATGAAAAGCTTTCAGCAATGGCAGTTGAATATGCAAAAGGCATTCCATTAGCCTTAAAATTGTTGGGTTCCTTTCTACGCTTAAGAAGTGGAGAAGCATGGAAAAGTGAACTAGCAAAACTCAAGTCTCATCCTGATTCCAGCATTTTCAATGTGTTGAAGTTGAGTTATGAGGGATTAGATGATTCAGACAAGAGCATATTTCTTGACATTGCATTCTTTTTCAAGGGAAATACGAAGGATTATGTCATAAAGTTTGCAGACTCTTGTGGTTTCTATGGAGGCATTGGAATAGACAACCTCCAACGTAAGGCTCTTATAACTATTTCAAGGTACAACACAATAGAAATGCATGATCTGATAAAGCAAATGGGTTTGGAAATTGTTTACAAGGAATCACCCAAGGACCTCAAAAAGCATAGCCGACTGAGGAATCGTGAGGATGTCAGGAATGTATTGGAAAATAGTGAGGGAGAAAAGTCAGTTGAAGGCATCGTGTGTGACTTGTCTCGAATTGGAGATGTACACTTGAATAAGGACACCTTTAAAAATATGCCTCACCTTAGGTATTTGGAGTGGAATGGTTATCCTCTGAATTCTCTACCATCAAGGTTTTGTGTGGAGAAGCTTGTTGAACTTAGGATGCCCAACAGTCAAATTTCTAAACTCTGGGATGGAATAAAGGATCTTCCAAATTTGACAGTGCTTGACCTTAATGGATGTAAAAAGTTGGTAGAGCTTCCAGATTTGAGTCAAGCAACAAAGCTTAAAAGCATAAACCTTAAGGAGTGTGAAAGCCTATGTCAACTTCATCCATCTATTTCATCCATCCAAACACTTGAATATTTGGATATTTATGGTTGCAAAAAACTGAAGAGTGTCAAAGGCAATTTTAAGTCTCCTAAAGCACTTCATGCTGGTAATTGTTCAAGCCTGGAGGAATTTTCAGTGTCGTCGTCAGAGAAACTGAGGACATTGAATTTGTCTTCGTCGAGAATTAAGAATCTTCCAAATGATTTTTGCAGCTTTATATTTCTTGAGCAACTTTATCTCAATGATTGCAGAGAGCTAACTGAGCTTCCACACAACATCAAAAACCTATCAAGGTTATGGACTATTGAGATAAGAGGTTGTTGTGGTCTTCGATCTATACCGGAGCTTTCACCATCTATTCAAGTATTTTGTGCTGAAGGCTGCAAATCACTGGAAACAATATTCAGTTTGAAGGCAGTATTTAGTTTGAACAGGAGAATTATCTCATTTGGAAATTGCATGAAATTGGAAAAGGAGTCCCTGAATGATATTATGGAAGATACACATCACACAATATTCAGAAATGCTTTGCTGCGGTTGGACTATTGGTCTAAAGGTAAATATATGTTGACGAATGATCATCATTTTAGTAGCATGGTAGATAGTGATAGTGTTTATCCAGGGTCTGAAGTTCCAAACTGGTTTAGTTATCTAACAGCAGATAGGTCCATAACAGTTGAACTTGATCAACCAGATGACCAGCTGTTGGGTTTCTACTTCTGTTGTGTTGTTTCTGAAAAGTTGCCATCTTATTTCAATAAATATGGTCGTGTGAGTATCAAGTGTAATTACAGCCTCTTCAACAATGGTGTTAAGGCCACATTTGTAAGTCAAACTATATACTTTGTCCATGAAAGAGCTGGAGGATGGAAGGGTGATCACGTTTTAATATGGAATAGTCCATTGGGTAGCCTGTTGAGTAACATTAACAGGTGCAGAGGCAGTAAAGGCAGTGATGATGATGATGATGATGACAGAACTTGCAACCAAAAGATCTCTTCCAGATTCGGTTTTTTCAGAGGTGAGAAAGAAAGGGAAGAATGTGATGAAGAGTGTTATATCAAAGGGTATGCCTCAACCGTAGTGGATGCCATTCAAAAACTTGAATTGGAATTCAACTTGAAACCTTCTGATCATACAACCATTCCATGTATAAATCTTGACATTTTGAAACGTGCCATGATCAGGAAGAGTAGAGGAAAATTAAAAGTCCAAAACCATGATGATCCGTGCATAATTACGTGA 3195 0.3772 MASSSSSSSASSSNSFNFPEIKYDVFISFRGEDIRTNFLSHLRKELRRNQIDFFLDDEKLHPGNEISSTLLRAIEQSYISLVVFSENYASSIWCMEELVKIIECMKQYQRIVIPVFYNINPSDVRHQKGTFAEAFDLHKEKYKEENMQRWRSVLNETANLSGIHYPSKYGNEAELIEDIVKVISKKLSHPFSYAPEDYIGINENFRFLPPLLAMESNEVRYVGIWGMGGIGKTTIARAIYTRYASQFEGCCFLENATEKWQKSSLLCLYEDVISELLEGEHLLVKGSSQARFEYVKRRLNRKKVLIVFDSVDAFEMLDFPNRNQIFLAPGSRVIVTSRDMQILIAARVHAIYKVQGLSFRSSLKLFCLNAFHKSYPENGYEKLSAMAVEYAKGIPLALKLLGSFLRLRSGEAWKSELAKLKSHPDSSIFNVLKLSYEGLDDSDKSIFLDIAFFFKGNTKDYVIKFADSCGFYGGIGIDNLQRKALITISRYNTIEMHDLIKQMGLEIVYKESPKDLKKHSRLRNREDVRNVLENSEGEKSVEGIVCDLSRIGDVHLNKDTFKNMPHLRYLEWNGYPLNSLPSRFCVEKLVELRMPNSQISKLWDGIKDLPNLTVLDLNGCKKLVELPDLSQATKLKSINLKECESLCQLHPSISSIQTLEYLDIYGCKKLKSVKGNFKSPKALHAGNCSSLEEFSVSSSEKLRTLNLSSSRIKNLPNDFCSFIFLEQLYLNDCRELTELPHNIKNLSRLWTIEIRGCCGLRSIPELSPSIQVFCAEGCKSLETIFSLKAVFSLNRRIISFGNCMKLEKESLNDIMEDTHHTIFRNALLRLDYWSKGKYMLTNDHHFSSMVDSDSVYPGSEVPNWFSYLTADRSITVELDQPDDQLLGFYFCCVVSEKLPSYFNKYGRVSIKCNYSLFNNGVKATFVSQTIYFVHERAGGWKGDHVLIWNSPLGSLLSNINRCRGSKGSDDDDDDDRTCNQKISSRFGFFRGEKEREECDEECYIKGYASTVVDAIQKLELEFNLKPSDHTTIPCINLDILKRAMIRKSRGKLKVQNHDDPCIIT 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181283g00025 1064 Pfam NB-ARC domain 214 426 IPR002182 GO:0043531
Stsc181283g00025 1064 ProSiteProfiles TIR domain profile. 21 187 IPR000157 GO:0007165
Stsc181283g00025 1064 Gene3D Ribonuclease Inhibitor 679 822 IPR032675 -
Stsc181283g00025 1064 Gene3D Ribonuclease Inhibitor 510 678 IPR032675 -
Stsc181283g00025 1064 Pfam Leucine Rich Repeat 588 607 IPR011713 -
Stsc181283g00025 1064 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 695 IPR044974 GO:0006952
Stsc181283g00025 1064 Gene3D - 20 188 IPR035897 -
Stsc181283g00025 1064 SMART till_3 22 160 IPR000157 GO:0007165
Stsc181283g00025 1064 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 162 IPR035897 -
Stsc181283g00025 1064 Gene3D - 189 351 IPR027417 -
Stsc181283g00025 1064 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 189 - -
Stsc181283g00025 1064 Pfam TIR domain 22 189 IPR000157 GO:0007165
Stsc181283g00025 1064 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 450 IPR027417 -
Stsc181283g00025 1064 Pfam C-JID domain 856 919 IPR045344 -
Stsc181283g00025 1064 SUPERFAMILY "Winged helix" DNA-binding domain 427 532 IPR036390 -
Stsc181283g00025 1064 PRINTS Disease resistance protein signature 221 236 - -
Stsc181283g00025 1064 PRINTS Disease resistance protein signature 298 312 - -
Stsc181283g00025 1064 PRINTS Disease resistance protein signature 391 405 - -
Stsc181283g00025 1064 PRINTS Disease resistance protein signature 607 623 - -
Stsc181283g00025 1064 SUPERFAMILY L domain-like 539 799 - -
Stsc181283g00025 1064 Gene3D - 357 440 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181283g00025 Stsc-Chr181283 137406 141216 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181283g00025 23 767 WRKY Transcription Factor Family AT4G12020 30.828 2.81e-91 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181283g00025 - - ahf:112728390 1117.45