Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181283g00020 ATGGTTGCGCTGGCGGCCTTCACCCTTGCCGCCGCTGCCGTCGCTGGTGAGGTGAGAAGAAGAGAGAGAAACCAAAATGTGTGTGTACATCAAAGAGAGAGAGAGTCGAAGAGGAATAAGGAGTTTCCGTCGCTCTCCTCCACAGTTTTCGCCGCCGTCGTCGACGAAGAAGCCATCACCGAAGGTGGCTGCTGCTATTGTTGTCTACTCTGGGGAGCATCCAAACTGGTTCCGGTTGGATACGGCATCAAGAAGCTACAGATCATGATGACTATTGTTGATGACCTTGTGTCTGTAGACTCCCTCATCGAGGAGCATCTCACCGTTGAGCCAGTCAAAGAGTATGTCCAGAGCTGTGACATTGTTGCATTCAACAAAATCTAA 384 0.5078 MVALAAFTLAAAAVAGEVRRRERNQNVCVHQRERESKRNKEFPSLSSTVFAAVVDEEAITEGGCCYCCLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEEHLTVEPVKEYVQSCDIVAFNKI 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181283g00020 127 FunFam Elongation factor 1-beta 1 like 65 127 - -
Stsc181283g00020 127 CDD EF1B 69 127 IPR014038 GO:0003746|GO:0006414
Stsc181283g00020 127 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 116 127 IPR001326 GO:0003746|GO:0005853|GO:0006414
Stsc181283g00020 127 Gene3D - 56 127 IPR014717 -
Stsc181283g00020 127 SUPERFAMILY eEF-1beta-like 69 127 IPR036219 -
Stsc181283g00020 127 Pfam EF-1 guanine nucleotide exchange domain 69 127 IPR014038 GO:0003746|GO:0006414
Stsc181283g00020 127 SMART EF1_GNE_2 46 127 IPR014038 GO:0003746|GO:0006414
Stsc181283g00020 127 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 69 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181283g00020 Stsc-Chr181283 128913 129296 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181283g00020 69 127 Eukaryotic Initiation Factors Gene Family AT2G18110 84.746 1.33e-31 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181283g00020 K03232 - gmx:100499878 114.39