Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181283g00015 ATGGCTTCTTCTTCTTCAATCAAACATGATGTGTTCATCAGCTTCAGAGGAGAAGATATTCGCACTTCTTTCCTTAGCCATTTGCGAAAAGAGCTGCATCGTGACCAAATTGATTTCTTTGTAGATGATGAAAAAATTCACCCTGGAGATGAGATTTCATCCACTCTTCTTCAGGCCATTGAAGAATCTTCTATTTCATTGGTCATCTTTTCGGAAAACTATGCTTCTTCAACTTGGTGCTTGAATGAACTTGTAAAAGTAGTTCAATGCATGAGACAACATCAAAGGGTTGTGATAGCTGTTCTCTACAACGTTCCTCCCTCTGATGTGCGATATCAGAATAACTCTTTCAAGAAGGCCTTTGATGAACACCAAAAAAAAATGGAGAGAGATATAAAGGTGCAAAGTTGGAGATCTGCTTTAAAGGAAGCTGCTGGTTTATCTGGATTTCATTATCAATCCAAATATCAAGATGAATCTAAATTCATTGAAGAAATTGTGAAAGATATTTCAGAGAAATTGTCAAATATTTTCTCAGCAGAATCCACAGTTCTTGTTGGAATAGATGACAGTATTAGAAGTGTTGAATTATTGTTGGCAATTGAATCAAGCGAAGTTCGAATCATAGGAATTTGGGGCATGGGAGGAATAGGTAAAACTACTCTTGCTGAGGCCTTATTTGATAAATATTCTTCCCAATATGAAGGCAGTTGCATGTTGAAAAATGTAAGAGACGAATCACAAAAGTTTGGCATGGTTTATTTATGTGACAAACTTGAATCGGGGCTATTAGCAGGAGAAGGCAGATCATCCAAAGCAAAATCCACTCTTTCCCGGAGAAAGTTAAGTCGAAAAAAGGTTTTCGTAGTGCTTGATGATGTGGATGCATTTCGGAAGTTAAAAGATTTTGCAATAGAATCGTTCGGATCAGGTAGTAGGATCATTGTAACAACCAGAGACAAGCATGTCCTTGCAAATGTTCATGATGCATATGAGCTCAAAGGCTTGAACTTTGAAAATTCCCTTAAGCTTTTTTGCTTGAGGGCTTTTGGAAAAGTCTATCCTGAAACTCAATATGAAGAGGTTTCGAAAATAGCAGTGAATTATGCAACTGGCATCCCATTAGCTTTAGAAGTTTTGGGTTCTTATTTACACTCTAAAACCATACAAGAATGGGAGAGTGCTTTGGGAAAACTCAAAATTTATCCTAATAAAGAGATTTTTGATGTCTTAAAATTGAGTTATGAAGGGCTAGATGAGTTAGAGAGGAATATATTCCTCGACATCGTATTTTTTTTCAAAGGAAAAGATAAAGATGTTGTCATACCATTTCTAGAATCATGTGAATTTTTCCCTGCTGATGGCATAGCCAATCTTTGTCGTAAAGCTCTCATAACTATTTCAAAGAATAATGAAATAGAAATGCATGACTTGATAGAACAAACGGGTCGAGAAATAGTTCGTCAAGAATCAATTAAAGACCAAGGAAGACGTAGCCGCTTAAGTGACCCCAAGGATGTCTACAATGTATTGAATGATAACAAGGGAACAGAGTCAGTTGAAGGCATTATGTTGGACATGTGTCAAATAAAAGAAGATCTACAATTAGATGCTGACACTTTTAAAAAGATGCCTGATATAAGGTTTCTCAAATTCTATGATTCATGGAGGAACCGAAAGTTAGGTGATGTGTACTTTTCTTCAACTCCGGAGTCATTTCCAAAGGGACTAAGATACTTGCAATGGAGTGGCTGGCCTCTGAAGTCTCTTCCTCCAAAATTTTGTGCCGAGAAGCTTGTTGAACTTTCTATGCCATGGAGCAAAGTTTCTAAACTTTGGGATGAAGTTCAGGATCTTACAAATTTAAAGAGGATTAACCTTATGGGATGCGAGAAGCTGGTGGAGCTTCCGGATTTTACTATGGCAACAAACCTTGAAGAAATAGATCTTGGTGAATGTGTAAGGTTGGGTGAACTTCATCCATCCATTTTATCCATCCAAAAGCTCAAAACCTTGAGTGTTGTTGGTTGCCGTGCTCTCCAGAGTCTTAAAAGCAAGATCCATTTGAAATCTCTTCAAAAACTCCTTGCTGGTAGCTGCTTAAGCATGAAGGAATTTTCAGTGTCATCAGAGGAACTAACAAGTTTGGATTTGCGTGCAACGAACATTGATAAGTTGAACTCATCAGTTGGCCATCTCAATAAACTTATACAGTTGGATCTCTCATATACGAGACTTAGAACTCTTCCAAACGAGCTGTGTCTCTTAGTATCCCTTGAGGAACTGGATCTTGAAGTATGCAAAGAGTTGATTGAACTCCCTCCCAATATGAAAGCCTTACCGCGGTTAAATTATCTCAACATTCGGTATTGCTACAGCCTTGGCTCTTTACCGGAGCTTCCGCCATCTATTATATGTTTATTTGCTGACAAATGCACATCGTTGGAGAAATTATTCAATGCAAAGGGAGTATTCAGTTTAAATCTAACATACATCTCATTTGGAAAGTGTAAGAGGCTTGATGTGCATTCATTCGCAAAATATGTGCTTCGTACAATGATAGGAGTAGCAATTAGAGACTTGTTGGGTGAGATGCTGCAATATAAATCTTGCGGCCAGGTTTGTTATCCCGGAAGGAAGGTTCCATCATGGTTCAAATATCACACAAGTGGGAGTTCAGTAACAGTTGACCTTGTTGCAGATCATCCTCATTATCCCCAAACACTATTGGGTTTCATCTTGTGCTGTGTTGTTCATCACAATCATCCTGACGATTTTCAGAGAGGTCATTTGAAGATCAGTTGTCGTTCAGATTTAGGGTGCAGCATAAAGTATATGCCGAGTGATACAATTAACTCAAACAATGTTTGTATATGGTTTGAAGAAGTTCGTTGTGACCATGGATTACGTGTCAGTAATGTTACATTTGAATTCAAAGATGCATATGTTGAGGAATTTCATGGCCTAGGTGAATGGGAGGTGGTAAGGTGCGGGGTTTGTCCAGTACATGCCTCAGACATCCTTGATATCCTTCAGAATGCGGATCCCCACTTCCTCTTCTTTTGTGATAGACATGAGTGTGACAGGAAGGAAGTTGATCAATTAGTTTTCACTCTTGACCAAGTGAAAACACGGCTGATTCACAAGATGGAACAACAACAAAAAGATCCATCGTTGAGACCCTTTTATGGGATTTGCAACATGGAAGAACAAGAACAAGAAGAAGAAGGAAGGAAGAAGAGGAAATGGAATTATGTTGGTGATTCCATCAAGATCAAAGAGAGTACCCCAGCACTTGAATGA 3303 0.3842 MASSSSIKHDVFISFRGEDIRTSFLSHLRKELHRDQIDFFVDDEKIHPGDEISSTLLQAIEESSISLVIFSENYASSTWCLNELVKVVQCMRQHQRVVIAVLYNVPPSDVRYQNNSFKKAFDEHQKKMERDIKVQSWRSALKEAAGLSGFHYQSKYQDESKFIEEIVKDISEKLSNIFSAESTVLVGIDDSIRSVELLLAIESSEVRIIGIWGMGGIGKTTLAEALFDKYSSQYEGSCMLKNVRDESQKFGMVYLCDKLESGLLAGEGRSSKAKSTLSRRKLSRKKVFVVLDDVDAFRKLKDFAIESFGSGSRIIVTTRDKHVLANVHDAYELKGLNFENSLKLFCLRAFGKVYPETQYEEVSKIAVNYATGIPLALEVLGSYLHSKTIQEWESALGKLKIYPNKEIFDVLKLSYEGLDELERNIFLDIVFFFKGKDKDVVIPFLESCEFFPADGIANLCRKALITISKNNEIEMHDLIEQTGREIVRQESIKDQGRRSRLSDPKDVYNVLNDNKGTESVEGIMLDMCQIKEDLQLDADTFKKMPDIRFLKFYDSWRNRKLGDVYFSSTPESFPKGLRYLQWSGWPLKSLPPKFCAEKLVELSMPWSKVSKLWDEVQDLTNLKRINLMGCEKLVELPDFTMATNLEEIDLGECVRLGELHPSILSIQKLKTLSVVGCRALQSLKSKIHLKSLQKLLAGSCLSMKEFSVSSEELTSLDLRATNIDKLNSSVGHLNKLIQLDLSYTRLRTLPNELCLLVSLEELDLEVCKELIELPPNMKALPRLNYLNIRYCYSLGSLPELPPSIICLFADKCTSLEKLFNAKGVFSLNLTYISFGKCKRLDVHSFAKYVLRTMIGVAIRDLLGEMLQYKSCGQVCYPGRKVPSWFKYHTSGSSVTVDLVADHPHYPQTLLGFILCCVVHHNHPDDFQRGHLKISCRSDLGCSIKYMPSDTINSNNVCIWFEEVRCDHGLRVSNVTFEFKDAYVEEFHGLGEWEVVRCGVCPVHASDILDILQNADPHFLFFCDRHECDRKEVDQLVFTLDQVKTRLIHKMEQQQKDPSLRPFYGICNMEEQEQEEEGRKKRKWNYVGDSIKIKESTPALE 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181283g00015 1100 SUPERFAMILY "Winged helix" DNA-binding domain 406 511 IPR036390 -
Stsc181283g00015 1100 Pfam TIR domain 8 183 IPR000157 GO:0007165
Stsc181283g00015 1100 Pfam C-JID domain 876 1005 IPR045344 -
Stsc181283g00015 1100 Gene3D - 2 175 IPR035897 -
Stsc181283g00015 1100 SUPERFAMILY L domain-like 549 840 - -
Stsc181283g00015 1100 Gene3D Ribonuclease Inhibitor 709 861 IPR032675 -
Stsc181283g00015 1100 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 150 IPR035897 -
Stsc181283g00015 1100 Gene3D - 335 419 IPR042197 -
Stsc181283g00015 1100 Pfam Leucine rich repeat 712 765 IPR001611 GO:0005515
Stsc181283g00015 1100 SMART till_3 8 147 IPR000157 GO:0007165
Stsc181283g00015 1100 FunFam Disease resistance protein (TIR-NBS-LRR class) 5 176 - -
Stsc181283g00015 1100 ProSiteProfiles TIR domain profile. 7 174 IPR000157 GO:0007165
Stsc181283g00015 1100 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 705 IPR044974 GO:0006952
Stsc181283g00015 1100 PRINTS Disease resistance protein signature 617 633 - -
Stsc181283g00015 1100 PRINTS Disease resistance protein signature 208 223 - -
Stsc181283g00015 1100 PRINTS Disease resistance protein signature 370 384 - -
Stsc181283g00015 1100 PRINTS Disease resistance protein signature 281 295 - -
Stsc181283g00015 1100 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 429 IPR027417 -
Stsc181283g00015 1100 Pfam NB-ARC domain 201 415 IPR002182 GO:0043531
Stsc181283g00015 1100 Gene3D Ribonuclease Inhibitor 469 708 IPR032675 -
Stsc181283g00015 1100 Gene3D - 176 333 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181283g00015 Stsc-Chr181283 110554 114176 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181283g00015 4 809 WRKY Transcription Factor Family AT4G12020 34.265 3.48e-107 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181283g00015 - - ahf:112728432 1370.14