Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181283g00014 ATGGCTGCTGCTTCTTCTTCTTCTTTAATCAAACATGATGTGTTCATTAGCTTCAGAGGAGAAGACATCCGCACTTCTTTTCTTAGCCATTTGCGAAAAGAGCTGCATCGTAACCAAATCGATTTCTTCATAGATGATCAAAAAATTCACCCTGGAGATGATATTTCATCCACACTTCTTCAGGCCATTGAAGAGTCCTTGATTTCGTTGATCATCTTTTCGGAAAACTATGCTTCTTCAACCTGGTGCCTGAATGAACTTGTAAAAGTTGTTGAATGCATGAAACAACATCAAAGGATTGTGATACCTGTTTTCTACAACGTTCTTCCCTCCGATGTGAGACATCAGAATAATTCTTTTAAGGAGGCTTTTGATAAACACCAACACAGATTCAAGGGAGATATCACCAAGGTACAAAATTGGAGTTCAGCTTTAAAGGAAGCTTCTGATTTATCTGGATTTCATTATCCATCCAAATATCAAGATGAATCTAAATTCATTGAAGAAATTGTGAAAGATATTTCGGAGAAATTGTCAAATATTTTCTCAACGGAATCCACAGTTCTTGTTGGAATTGATGACTGTATTAGAAGTGTTGAATCATTGTTGGCAATTGAATCAAGCGAAGTTAGAATCATAGGAATTTGGGGCATGGGAGGAATAGGTAAAACTACTCTTGCTGAGGCCTTATTTGATAAATATTCTTCCCAATATGAAGGCAGTTGTATGCTGAAAAATGTAAGAGAAGAATCACAAAAGTCTGGTGTGCCTCATTTATTTGAAAAACTTGTTTCTGAGTTATTGGAGGGAGAAAGTCTTCATTTGAAAGGATCATCAAAAGCAAGATCCACTTTTGTACAGAGAAAGTTAAGTCGAAAAAAAGTTTTCATAGTGCTTGATGATATGGATACAGTAGAGCAGTTTGAACACCTTGCTACACATTGGCTGGGACCAGGTAGTAGGATCATTATAACTGCCAGAGACAAGGATGTCCTTAGAAAGGTTCATGGAATATATGAGGTCCAGGGCTTGAGCTTCGAAAATTCCTTCAAGCTTTTTTGCTTGAATGCTTTTGACAAAGTTTATCCTGAAGCTGGATATGAAGAAATTTCGAGAATGGCAGTCAACTATGCAAATGGCATCCCCTTGGCTTTAAAAGTTTTGGGTTCTTTTTTATATTCTAAAACCATAGAAGAGTGGGAGAGTGCTTTAAGAAAACTCAAGATTTATCCTAACACAGATATTTTTAATGTCTTAAAGTTGAGTTATGATGGACTAGATGAGTTAGAGAGGGAGATATTTCTTGACATTGTATTCTTTTTCAAAGGAGAAAAAAAGGATGTTCTCATGCCATTTCTTGAATCGTGCGGTTTTTTCCCTGCTATTGGCATAGCCAATCTTTCTCGTAAAGCTCTTATAACTATTTCGAAGTATAATGAAATAGAAATGCATGACTTGATAGAACAAATGGGTCGAGAAATAGTCCGTCAAGAATCCGTTAAAGACCCAGGAAGACGTAGCCGTTTGAGTAACACTGAGGATGTCTCCAATGTATTGAATTATAATAAGGGAACAGACTCGGTTGAAGGCATTGTGTTGGACATCTCTCAAATTAAGAGAGATCTGCATTTAGATGCTGACACATTCAAAAGGATGCCTTATATAAGGTTTCTCAAATTTTACCATTCCGGGAGGGGTACCACAGCACCGAATGTGTATGTTTCTTCAACTTTGGAGTCATTTCCTAACGAACTAAGATACTTGGAGTGGAGTGGCTGCCCTGTCAAGTCTCTTCCTGCAGCGTTTTGTGCTGAGAAGCTTGTTGAGCTTTCTATGCCACGGAGCAAAGTTTCTAAACTTTGGAATGGAGTTCAGGATCTTGTAAATTTAAAGAGGATTAACCTCAATGAATGCTGGGAGCTAGTGGAGCTTCCAGATTTTACTAAGGCGTCGAACCTTGAAGAAGTATACCTCAAGAATTGTTTAAGCTTGTGTGAACTTCATCCATCCATTTTATCCATCCACAAGCTTGAAACCTTAAATGTTTATGGTTGCAAAGAGCTTAAGAGTCTTAAAGGCGAGATTCATTTGAAATCTCTAACGATCCTCGATGTTCGTAATTGCTCAAACATGAGAGAGTTTTCAGTGTCATCAGAGGAACTAACAAGTTTGGATTTCCGTTGGACAATAATTTATAAGTTGCACTCAACAGTTAGCCGTCTCAGCAAACTTGTGGAGTTTGATCTATATGGTGTGAGAGTTGAAGCTCTTCCAGACGAACTGTGTCTCTTAGTATCTCTTGAGAAACTAAATCTTGAAGGATGCAAACAGTTGATTGAACTCCCTCAAAATATGAAGGCCTTATCACGGTTACAGCATCTCAACATAGCGGATTGCTGCAGCCTTCGATCTTTACCAGAGCTTCCACCATCTATTATACATCTATCAGCCAATAACTGCACATCACTGGAGAGATTATTCAATGCAAAGGCAGTTTTAAGTTTAAATCTGATATCTATCTCATTTGAAAACTGTGTCAGGCTTGATGATGATTCATTCTTAGAATATGTGCATCATCCAATGATGGGAGTAGCAATTAGAAAGATGTTGGGTTGGATGGTGGAACGTAGTTTTACTCATTCCAGTATCATACATGTTTACGACCCTAGTATCTTTTATCCCGGAAGCAAGGTTCCATCATGGTTCAAATTTCAGACAGGAAGGAGTTCGGTAACTGTTGAACTTGTTGCAGATGAACCTCATTATCTGGATAGGCTAGTGGGTTTCATTTTGTGCTGTGTTGTTCATCATATTCCTTCTCAAAGAGAGGCTCCTCGAAAGCAGACTCCCATGATCCAATGTAGATGCGGCGATCTATGGCTTAGTAAAAGGAGTGCTGAAACATGTGGGTTGAGCTCAGACCATGTTTGTATATGGTTTGAACAAGCTGGTGGTGAACATGGATTGCGTGACAAGAATGTTACTTTGAATTTCAAGACTTATTACAGATCATGGGCATCATCAATTGAGTTTAACGAAGCATGGGAGGTGATAGGGTGCGGGGTTTGCCCAGTATATGCCTCAGATGTTCTGGATGCCTTTCAAAATGTGGATGCAGAGTTTAAGTTCTTTTATGATAGAGGCAGACACGAATGGCTAGATCTTGTTGAAGCATCCGTTTTCACTCTTGACCAAGTGAAAACACTGCTGATTCATAAGATGGAACAACAAAACGAGGAAGACGACGAAGAGGAAGAAGAAGAAGAGGAGGAGGAAGAAGTGGAATTATGGTCCCAAGACTCTTATGCTTTTGACCGTTTACAGATTCTATTTGGATAG 3339 0.3878 MAAASSSSLIKHDVFISFRGEDIRTSFLSHLRKELHRNQIDFFIDDQKIHPGDDISSTLLQAIEESLISLIIFSENYASSTWCLNELVKVVECMKQHQRIVIPVFYNVLPSDVRHQNNSFKEAFDKHQHRFKGDITKVQNWSSALKEASDLSGFHYPSKYQDESKFIEEIVKDISEKLSNIFSTESTVLVGIDDCIRSVESLLAIESSEVRIIGIWGMGGIGKTTLAEALFDKYSSQYEGSCMLKNVREESQKSGVPHLFEKLVSELLEGESLHLKGSSKARSTFVQRKLSRKKVFIVLDDMDTVEQFEHLATHWLGPGSRIIITARDKDVLRKVHGIYEVQGLSFENSFKLFCLNAFDKVYPEAGYEEISRMAVNYANGIPLALKVLGSFLYSKTIEEWESALRKLKIYPNTDIFNVLKLSYDGLDELEREIFLDIVFFFKGEKKDVLMPFLESCGFFPAIGIANLSRKALITISKYNEIEMHDLIEQMGREIVRQESVKDPGRRSRLSNTEDVSNVLNYNKGTDSVEGIVLDISQIKRDLHLDADTFKRMPYIRFLKFYHSGRGTTAPNVYVSSTLESFPNELRYLEWSGCPVKSLPAAFCAEKLVELSMPRSKVSKLWNGVQDLVNLKRINLNECWELVELPDFTKASNLEEVYLKNCLSLCELHPSILSIHKLETLNVYGCKELKSLKGEIHLKSLTILDVRNCSNMREFSVSSEELTSLDFRWTIIYKLHSTVSRLSKLVEFDLYGVRVEALPDELCLLVSLEKLNLEGCKQLIELPQNMKALSRLQHLNIADCCSLRSLPELPPSIIHLSANNCTSLERLFNAKAVLSLNLISISFENCVRLDDDSFLEYVHHPMMGVAIRKMLGWMVERSFTHSSIIHVYDPSIFYPGSKVPSWFKFQTGRSSVTVELVADEPHYLDRLVGFILCCVVHHIPSQREAPRKQTPMIQCRCGDLWLSKRSAETCGLSSDHVCIWFEQAGGEHGLRDKNVTLNFKTYYRSWASSIEFNEAWEVIGCGVCPVYASDVLDAFQNVDAEFKFFYDRGRHEWLDLVEASVFTLDQVKTLLIHKMEQQNEEDDEEEEEEEEEEEVELWSQDSYAFDRLQILFG 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181283g00014 1112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 437 IPR027417 -
Stsc181283g00014 1112 SMART till_3 11 151 IPR000157 GO:0007165
Stsc181283g00014 1112 Pfam C-JID domain 893 1030 IPR045344 -
Stsc181283g00014 1112 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 180 - -
Stsc181283g00014 1112 Gene3D - 180 340 IPR027417 -
Stsc181283g00014 1112 Pfam TIR domain 11 190 IPR000157 GO:0007165
Stsc181283g00014 1112 Pfam Leucine Rich Repeat 606 625 IPR011713 -
Stsc181283g00014 1112 ProSiteProfiles TIR domain profile. 10 178 IPR000157 GO:0007165
Stsc181283g00014 1112 SUPERFAMILY L domain-like 483 849 - -
Stsc181283g00014 1112 Coils Coil 1071 1100 - -
Stsc181283g00014 1112 Gene3D - 344 427 IPR042197 -
Stsc181283g00014 1112 PRINTS Disease resistance protein signature 695 711 - -
Stsc181283g00014 1112 PRINTS Disease resistance protein signature 378 392 - -
Stsc181283g00014 1112 PRINTS Disease resistance protein signature 212 227 - -
Stsc181283g00014 1112 PRINTS Disease resistance protein signature 289 303 - -
Stsc181283g00014 1112 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 715 IPR044974 GO:0006952
Stsc181283g00014 1112 MobiDBLite consensus disorder prediction 1075 1097 - -
Stsc181283g00014 1112 MobiDBLite consensus disorder prediction 1078 1097 - -
Stsc181283g00014 1112 FunFam Disease resistance protein RPS4 525 719 - -
Stsc181283g00014 1112 Gene3D Ribonuclease Inhibitor 696 840 IPR032675 -
Stsc181283g00014 1112 Gene3D Ribonuclease Inhibitor 531 695 IPR032675 -
Stsc181283g00014 1112 Pfam NB-ARC domain 202 408 IPR002182 GO:0043531
Stsc181283g00014 1112 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 154 IPR035897 -
Stsc181283g00014 1112 Gene3D - 6 179 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181283g00014 Stsc-Chr181283 104406 108339 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181283g00014 7 1067 WRKY Transcription Factor Family AT4G12020 29.991 8.05e-112 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181283g00014 - - ahf:112728432 1538.09