Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181283g00005 ATGGATTATGGTAATAAGTACATTGTTCCAATACCTGGAATCAAAATTTTGGTGGTGGATTGTGATTTAACATCACTAGCATCAGCATCTAAAATGCTTAGAATCCTTGGATATGAAGTTGTGACTGCTACACTAGGTTCTGATGCTTTATCAATTATTGAGAAGAACAAGCTCCACATTGTGCTCATGGAGATTCATTTACCTGACATGGAAACTTTTGAACTCATTGACAAAATCAGAGAAAGCTATGGCATACCATCCCTCATTATGACTGCTGATGGAGATAATGCTTCAATTGCAAAAGCACTAAGCAAAGGAGCTAAACACTATTTCATAAAGCCAATTCTGATTTCTGATTTAAAGGGCCTCTGGCAATTTGCATTATGCAGCACAAAACTTTCCATACTGAACAAGAATCAACCATGGAAACCACTGAATAATAACAGTAACAATAATAGTAAAGGGAAAGAACAAGAACTTGCTGAACCAGTAGTCCAGAAAAGGAGAAGGATTAGGTGGACTGATCATCTGCATAGGAAGTTCATGGAAGCTGTTATATTAGCAGGACATGGTGCTGGTCCTAAGAAAATTCATGAGTATATGAATATGCCAGGAATCACAAAACAGCATGTTTCAAGCTATTTACAGAAATATCGCCAACTGTTGAAAGAGCAAGCGAATCAGATTCAATATCAAAAGAAAAGACTATCATTATCAACTGATTCAAATTTAGGATCAAGCCAATCGAATGATCTCTTTCGTTGCGAGCCAGTGCAATTTCTTGGTACTCCTGCATATTTTCCTTCTACAGAAATCCCAGCGGTTCATGAACCAGCTTTTAGCCAAAACCAGTTATTCCCAGGGACACTGATGCAAGGTGAGATGAATGGCTATGGTGTGGAATCTGTAGATTTTAGCCAAGTGGAAAGTTTTACTGATGGAAGTGTCTTCGACAAAGATCAATTATTCTCGAGCGCTGATTTTGAAGCAATGATGGCAAATATTGAGCCTTGTTTCACTAGCTGGAGTCAGTTACTTGAACTACAAGACACCTCTTACGACGTGTCCTCTATGGATTTTACTGCTGCAAAAAAGGAACTGCATTGTTCGATTCCGCTGGATAACAACATGTGTGAACAATTCCCCCCAGAACTTCCTTTTCTTTCAATGCCATCAGGAAATGTTGATGATGAGATCTTCAATATTTCAGAGGAAACTGAGAAGGTCTGTGATGAGGATTTAGTTACTTGGCTAAAAAGCTTATAG 1266 0.3839 MDYGNKYIVPIPGIKILVVDCDLTSLASASKMLRILGYEVVTATLGSDALSIIEKNKLHIVLMEIHLPDMETFELIDKIRESYGIPSLIMTADGDNASIAKALSKGAKHYFIKPILISDLKGLWQFALCSTKLSILNKNQPWKPLNNNSNNNSKGKEQELAEPVVQKRRRIRWTDHLHRKFMEAVILAGHGAGPKKIHEYMNMPGITKQHVSSYLQKYRQLLKEQANQIQYQKKRLSLSTDSNLGSSQSNDLFRCEPVQFLGTPAYFPSTEIPAVHEPAFSQNQLFPGTLMQGEMNGYGVESVDFSQVESFTDGSVFDKDQLFSSADFEAMMANIEPCFTSWSQLLELQDTSYDVSSMDFTAAKKELHCSIPLDNNMCEQFPPELPFLSMPSGNVDDEIFNISEETEKVCDEDLVTWLKSL 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181283g00005 421 SUPERFAMILY Homeodomain-like 166 224 IPR009057 -
Stsc181283g00005 421 ProSiteProfiles Response regulatory domain profile. 15 128 IPR001789 GO:0000160
Stsc181283g00005 421 Gene3D - 11 132 - -
Stsc181283g00005 421 NCBIfam myb-like DNA-binding domain, SHAQKYF class 169 220 IPR006447 GO:0003677
Stsc181283g00005 421 SMART REC_2 14 124 IPR001789 GO:0000160
Stsc181283g00005 421 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 250 IPR045279 GO:0009736
Stsc181283g00005 421 Coils Coil 215 235 - -
Stsc181283g00005 421 CDD REC_typeB_ARR-like 16 128 - -
Stsc181283g00005 421 Gene3D - 164 224 - -
Stsc181283g00005 421 MobiDBLite consensus disorder prediction 140 162 - -
Stsc181283g00005 421 SUPERFAMILY CheY-like 12 128 IPR011006 -
Stsc181283g00005 421 MobiDBLite consensus disorder prediction 140 157 - -
Stsc181283g00005 421 Pfam Response regulator receiver domain 16 121 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181283g00005 Stsc-Chr181283 17287 20840 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181283g00005 13 240 Response Regulator Gene Family AT4G31920 31.707 1.68e-29 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc181283g00005 Response_reg 9.6e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181283g00005 - - ahf:112728429 573.548