Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181283g00003 ATGGGGAGTTCGAGTTCGGGTGCGAATTTGGTGACTACAATAATTGGTTTTGGATTGAGTGCAACATTCATAGTGTTTGTGTGCACAAGAATCATTTGTGGAAGAATACAAAGGCATATAGCATCTTCATCATCATCATCAAGGACTATGTATGAATTTCAATCAAGACCAGTAGACATAGAACGGGGAGAACATGATCATGTTAATGAGGGAGTATCTGCTCTTGTTTCTGCAATCCCCACTTTGAAGTTCAACCAAGAAGCTTTCAGTTCCATTCAATGTACACAGTGTGTGATATGTTTGGGAGATTACAAAGAGCAGGAATTGTTGAGAATCATACCAAAATGTGGGCACTGTTTTCATCTCAATTGCATTGATATGTGGCTGAGAAAGCAATCCACATGCCCTGTTTGCCGTTTGCCACTTAAAAATGCTCTTCAACCAAAAAATGTCACAACTCTGGCATTCACAATAAGTCACCATCTCTCTCTTGATGATGATGATGATGAGTCTAATAGTTCATTACAAAGGAACATTATCATTAGTGATGAGAGGGAAGTGGTTGAATCTAATTCTAGTAATAGTAACATCTCACTTGCAATTTCTTCAGGAGAAGCAGAAATAAGACCCTCATAA 636 0.3836 MGSSSSGANLVTTIIGFGLSATFIVFVCTRIICGRIQRHIASSSSSSRTMYEFQSRPVDIERGEHDHVNEGVSALVSAIPTLKFNQEAFSSIQCTQCVICLGDYKEQELLRIIPKCGHCFHLNCIDMWLRKQSTCPVCRLPLKNALQPKNVTTLAFTISHHLSLDDDDDESNSSLQRNIIISDEREVVESNSSNSNISLAISSGEAEIRPS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181283g00003 211 PANTHER OS11G0150450 PROTEIN 5 195 - -
Stsc181283g00003 211 SMART ring_2 97 138 IPR001841 -
Stsc181283g00003 211 CDD RING-H2_EL5-like 96 139 - -
Stsc181283g00003 211 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Stsc181283g00003 211 SUPERFAMILY RING/U-box 96 147 - -
Stsc181283g00003 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 147 IPR013083 -
Stsc181283g00003 211 Pfam Ring finger domain 96 139 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181283g00003 Stsc-Chr181283 12360 13828 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181283g00003 71 142 C3H Transcription Factor Family AT4G10160 44.444 3.23e-18 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181283g00003 - - adu:107475875 276.559