Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181283g00001 ATGGATTATGGTAATAAGTACATTGTTCCAATACCTGGAATCAAAATTTTGGTGGTGGATTGTGATTTAACCTCACTAGCATCAGCATCTAAAATGCTTAGAATCCTTGGATATGAAGTTGTGACTGCTACACTAGCTTCTGATGCTTTATCAATTATGGAGAAGAATAAGCTCCACCTTGTGCTTATGGAGATTCATTTGCCTGACATGGAAACTTTTGAACTCATTGACAAAATCAGAGAAAGCTATGGCATACCATCTCTCATTATGACTGCTGATGAAGATAAAGCTTCAATATCAAAAGCACTAAGCAAAGGAGCTAAGCACTATTTCATAAAGCCACTTCTGATTTCTGATTTAAAGGGCCTCTGGCAATTTGCATTTTCCATACTGAACAAGAATCAACCATGGAAACCACTGAATAATAATAGTAACAATAATAGTAATGGGAAAGAACAAGAACTTGCTGAACCAGTAGTCCAGAAAAGGAGAAGGATTAGGTGGACTGATCATTTGCATAGGAAGTTCATGGAAGCTGTTATATTAGCAGGACATGGTGCTGGTCCTAAGAAAATTCATGAGTATATGAATGTGCCAGGAATCACAAGACAGCATGTTTCAAGCTATTTACAGAAATATCGCCAATTGTTGAAAGAGCAAGGGAATCAGATTCAATATCAAAAGAAAAGACTATCATTATCATCTGATTCAAATTTAGGATCAAGCCAACCGAATGATCTCTTTCGTTGCGAGCCAGTGCAATTTCTTGGTACTCCTGCATATTTTCCTTCCACAGAAATTCCAGTGGTTCATGAACCAGCTTTTAGCCAAAACCAGTTATTCCCAGGGACACTGGTGCAAGGTGAGATGAATGGCTATGGTGTGGAATCTGTAGATTTTAGCCAAGTGGAAAGTTTTACTGATGGAAGTGTCTTCGACGAAGATCAATTATTCTCGAACCCAGATTTTGAAGCAATGATGACTTATTTCACTAGCTGGAGTCAGTTACTTGAACTACAAGACACCTCTTACGACATGTCCTCTATGGACTATACTGCTGCAAACCGGGAACTGCATTGTTCGATTCTGTTCGATAATGACATGTGTGAACAATTTCCCTCAGAACTTCCTTTTCCTTCAATGCCATCAGGAAATGTTGATGATGAGATCTTCAATATTTCAGAGGAAACTGAGAAGGTCTGTGATGAGGATTTAGATACTTGGCTAAAAAGCTTGTAG 1239 0.3842 MDYGNKYIVPIPGIKILVVDCDLTSLASASKMLRILGYEVVTATLASDALSIMEKNKLHLVLMEIHLPDMETFELIDKIRESYGIPSLIMTADEDKASISKALSKGAKHYFIKPLLISDLKGLWQFAFSILNKNQPWKPLNNNSNNNSNGKEQELAEPVVQKRRRIRWTDHLHRKFMEAVILAGHGAGPKKIHEYMNVPGITRQHVSSYLQKYRQLLKEQGNQIQYQKKRLSLSSDSNLGSSQPNDLFRCEPVQFLGTPAYFPSTEIPVVHEPAFSQNQLFPGTLVQGEMNGYGVESVDFSQVESFTDGSVFDEDQLFSNPDFEAMMTYFTSWSQLLELQDTSYDMSSMDYTAANRELHCSILFDNDMCEQFPSELPFPSMPSGNVDDEIFNISEETEKVCDEDLDTWLKSL 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181283g00001 412 MobiDBLite consensus disorder prediction 138 157 - -
Stsc181283g00001 412 SUPERFAMILY CheY-like 12 137 IPR011006 -
Stsc181283g00001 412 MobiDBLite consensus disorder prediction 138 154 - -
Stsc181283g00001 412 SMART REC_2 14 124 IPR001789 GO:0000160
Stsc181283g00001 412 Gene3D - 11 133 - -
Stsc181283g00001 412 CDD REC_typeB_ARR-like 16 128 - -
Stsc181283g00001 412 ProSiteProfiles Response regulatory domain profile. 15 128 IPR001789 GO:0000160
Stsc181283g00001 412 Gene3D - 159 219 - -
Stsc181283g00001 412 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 247 IPR045279 GO:0009736
Stsc181283g00001 412 Pfam Response regulator receiver domain 16 121 IPR001789 GO:0000160
Stsc181283g00001 412 NCBIfam myb-like DNA-binding domain, SHAQKYF class 164 215 IPR006447 GO:0003677
Stsc181283g00001 412 SUPERFAMILY Homeodomain-like 161 218 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181283g00001 Stsc-Chr181283 1940 5333 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181283g00001 13 235 Response Regulator Gene Family AT4G31920 32.780 3.14e-32 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc181283g00001 Response_reg 2.8e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181283g00001 - - ahf:112728429 563.148