Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181281g00029 ATGGCTCAACTTCACCCCAATCATCTCACATGGATTCACCTTCACCTCATCCTCCTCTTCCTCCTCCATGGCAGTCATAGTGTAGTTCATGCACAAGGTTCCATGGAGCCAGTTCCCACAGACATCTCCCACCATAGATGGCAACCTTCTTTTGCAATCACCATAGGTGCCATCATCTGTGCCTTCCTCTTCATGGGGATCATCACAATTTACCTCCGTAACTGTGCTGGATCACACATCATCAACAATAGAAACCTAACCAACCCAACCTCCTCAGAATGTTCATGTTCTTGTTCACAAGGGATCACCAAGGAACTCCTCAACACTTTCCCAATCCTCTTCTACCCCACCATCAAGGACCTCAAGATAGGTAACGGATCACTAGAATGTGCAATTTGCTTAACAGATTTCAAGGACTACGACACACTCAGGCTTCTACCAAAGTGTAACCACGTCTTCCACCCTCAATGCATAGACTCATGGCTATGTTCCCACGTCACATGCCCCGTTTGTCGCGCGAATCTGAACCAAGATGCATGCGAAACTGCCATAACTGTTCCCACTCATTTGAGCACTCCCCAAAGGGGTGAAGAAAGTCCAGAACTTGAAGCCGAGAACAACGTTGGTGAAGAGAACAACGTGGTGGAGCAAAACCATGTCGAGAAAAACGAGGTTTTGAGCAGCAACGATGGTGGTGATGGAGAAGTTGATGGTGGAAGTGATGGGGTTGTGTCAAAACCGAAGCTTTTGAGGTCAAATTCAACAGGACACACGCTTGTGGAGCAAGTGAAGAGCGAGGAGAGGTACACACTGAGGTTACCGGAAGATGTAAGGAGGTACATTCTGGTGAACCATGGTGAAACGGTGCAGCGTTCAGCCAGCTACAACAACAACAATGGCAACAACGTGGTGAGAGGGGTGTGTTGGAGTGACAGTGAAGAGAGCAGCGGTGGTGGTAAGAGATGCAACAATGGAGAGGTGAAGGTAGAGAGGTGGGTGCTTTGTAGCCATGGCTGA 1017 0.4848 MAQLHPNHLTWIHLHLILLFLLHGSHSVVHAQGSMEPVPTDISHHRWQPSFAITIGAIICAFLFMGIITIYLRNCAGSHIINNRNLTNPTSSECSCSCSQGITKELLNTFPILFYPTIKDLKIGNGSLECAICLTDFKDYDTLRLLPKCNHVFHPQCIDSWLCSHVTCPVCRANLNQDACETAITVPTHLSTPQRGEESPELEAENNVGEENNVVEQNHVEKNEVLSSNDGGDGEVDGGSDGVVSKPKLLRSNSTGHTLVEQVKSEERYTLRLPEDVRRYILVNHGETVQRSASYNNNNGNNVVRGVCWSDSEESSGGGKRCNNGEVKVERWVLCSHG 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181281g00029 338 MobiDBLite consensus disorder prediction 210 225 - -
Stsc181281g00029 338 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Stsc181281g00029 338 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 36 276 - -
Stsc181281g00029 338 SUPERFAMILY RING/U-box 124 178 - -
Stsc181281g00029 338 CDD RING-H2_EL5-like 129 172 - -
Stsc181281g00029 338 MobiDBLite consensus disorder prediction 190 250 - -
Stsc181281g00029 338 FunFam E3 ubiquitin-protein ligase ATL6 90 178 - -
Stsc181281g00029 338 SMART ring_2 130 171 IPR001841 -
Stsc181281g00029 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 181 IPR013083 -
Stsc181281g00029 338 Pfam Ring finger domain 129 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181281g00029 Stsc-Chr181281 154997 156728 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181281g00029 7 334 Rapid Response to Elicitors AT3G05200 33.134 7.49e-55 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181281g00029 K10664 - gmx:100782532 318.931