Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181281g00028 ATGATGATGAATTTCCTCCAGTACTGCCACGTCATCACCATCATCTTCCTTCCTTCACTCCCCAACATTGCTGCTCAATTAGCAGCTCTCTCACCTCAACGAACTGTTCTAGTCAACGAAACCACCAACGGAAACCCTTCCGTTGCCATCCTTCTTGTGGTTCTCATCTTCGCATTCTTCATGACTGGCTTCTGCGCCGTCTACATTCGTCACTGCTCTGAAAGCTACCTCCTTCAAGGAGGACCTTCTACTGCCAATGCTGCTACTGGTGCTCCACGTGGCGTGGATCCCGAGGTGCTTTCCACGTTCCCGATTCTGGTGTATTCCACCGTCAAGCACCTCAAAACGGGTCACACTACTGCATCATCATCGCTTCAGTGTGCTGTGTGCTTGAGTGAGTTCAAGGACATGGATAGCCTCAGGCTTTTGCCCAAGTGCAGTCACGTGTTTCACCCTCACTGCATCGACGCGTGGCTCGCTTCTCACGTGACTTGCCCTGTCTGCAGGGCCAAGATGAAGTCGGAAAAGGTGGAGTTCAAGGTTGAGATTCAGGAGTTGGAGGGGAGTGCCGACCACGTGTTCGATGAAATGTCTGAGAGAATGGGTGAGGTGTCTTGTGATGGGAACGAAGGTGGGGTTGGTGAGGGAGTTGATGGGATTGTTGGGAAGTGTAATGGGTCTTCAAAGGTGAGAGCTTTTGGGTTGTTGGTGAGGTCGCACTCTACGGGTCACTCTCTTGTTGAACCGGAGAAGAGCTTCGAGAGGTTCACTCTGAGGTTGCCTGAGGAATTGAGGAAGCATATTCTGGAAGAAGCGAATCATAAGTGTAGTGGTGGTGGTGGGATGAAGCGTTCGGCAAGCTACGATGTCGTTTTGCAAAGTGAAGTTGGTGAAGGAAGTAGTAGTAACAATAATAAGGGGAGTAAGAATGGTAGGTGGGTGCTGTCTATGACACCTCCCTTTGTTTCTCGCGGTTGGGGTCATTTTAGTACTTCTTCTGGGATTCCTAGGTTTTGGGGTTCTTCAGCAGCAAGGGAAGAGAAAGGATGTGAAGGGAGAGCGGGTTTGCAAGTAGTGTGA 1080 0.5037 MMMNFLQYCHVITIIFLPSLPNIAAQLAALSPQRTVLVNETTNGNPSVAILLVVLIFAFFMTGFCAVYIRHCSESYLLQGGPSTANAATGAPRGVDPEVLSTFPILVYSTVKHLKTGHTTASSSLQCAVCLSEFKDMDSLRLLPKCSHVFHPHCIDAWLASHVTCPVCRAKMKSEKVEFKVEIQELEGSADHVFDEMSERMGEVSCDGNEGGVGEGVDGIVGKCNGSSKVRAFGLLVRSHSTGHSLVEPEKSFERFTLRLPEELRKHILEEANHKCSGGGGMKRSASYDVVLQSEVGEGSSSNNNKGSKNGRWVLSMTPPFVSRGWGHFSTSSGIPRFWGSSAAREEKGCEGRAGLQVV 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181281g00028 359 CDD RING-H2_EL5-like 126 169 - -
Stsc181281g00028 359 SMART ring_2 127 168 IPR001841 -
Stsc181281g00028 359 Pfam Ring finger domain 126 169 IPR001841 -
Stsc181281g00028 359 PANTHER RING FINGER DOMAIN-CONTAINING 36 172 - -
Stsc181281g00028 359 SUPERFAMILY RING/U-box 119 174 - -
Stsc181281g00028 359 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Stsc181281g00028 359 FunFam E3 ubiquitin-protein ligase ATL6 83 175 - -
Stsc181281g00028 359 Coils Coil 169 189 - -
Stsc181281g00028 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 175 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181281g00028 Stsc-Chr181281 150038 151820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181281g00028 4 324 Rapid Response to Elicitors AT3G05200 34.808 3.66e-54 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181281g00028 K10664 - qsa:O6P43_030504 220.705