Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181281g00026 ATGACTCCGCCTCCACCGACGCCGGTGGATAACAACTCCGACTCCCCCGCTACCGGCGGGGAGTCTCAGAGATCCATCCCGACTCCCTTTCTCACTAAGACCTACCAGCTCGTTGAGGACCAATCCATCGATGACGTCATCTCATGGAACGACGATGGATCCACCTTCATCGTCTGGAATCCTACCGTCTTCGCTAGGGACCTTCTCCCTAAGTATTTTAAACACAATAATTTCTCCAGCTTTGTTCGCCAGCTCAACACCTATGGATTTAGAAAAGTCGTACCTGATCGTTGGGAATTCTCCAACGAGTGTTTTCGCCGGGGGGAGAAGCGCCTCCTCTGCGAGATTCAGCGCCGGAAGATCTCTACGCCGTCACCGTCTCCTTCTCCAACGGCTGCCGCGGTTGCCACCGCTACCGTCGCGGTTCCTTCTCCGATGCCGTTGACCGCCATACCGACGGCGATGCCGATCATTTCGCCGTCAAACTCCGGCGAGGAGCAGGTGATATCGTCTAGCTCTTCGCCGTCGCGAGCGCCGGCGGAGCTTCTCGACGAGAACGAGAGGCTGCGGAAGGAGAACGTTCAGCTCACGAAGGAGCTCGCCGAGATGAGATCGCTTTGCAACAACATATTCTCTCTTATGTCGAATTACGCCACTACCAACGCCACCACAACTACCACCACAAACAACAGCAACAGCAACCAAATCGATGGAAGCGCTCAAGGAAGCAGAGATTCCGCTTTCACGGCGGTGAGGCCGCTAGATTTGATGCCGGTAAAGAGGAGTTCCGGCGGGGAATCGTGGACGGAAACTGCGACGGCGATGATGGTGGAGGAGATGAATCCGAAGCTCTTTGGCGTGGCGATTGGAGCAAAGCGTGCGAGAGAAGGTGGTGGTGGTAGTGGTGGTGAAGGAGTAGTAGGAGGAGGAGGAGGTGGTAGTAGTGGTGGTGGAAGAGAAGGGGAGGAGGATACGCTGCTGCGCCTTCATCAACCGGGGCATGCGGACGTGAAATCAGAGCCGTTAGATTGCCAGAACCATCGCGATAGTAGTAATCAGGAGACTCCATGGCTGAACCAGTGCCACAGAGCGAATCAGAGAGTTTGCAATTAA 1113 0.5544 MTPPPPTPVDNNSDSPATGGESQRSIPTPFLTKTYQLVEDQSIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNECFRRGEKRLLCEIQRRKISTPSPSPSPTAAAVATATVAVPSPMPLTAIPTAMPIISPSNSGEEQVISSSSSPSRAPAELLDENERLRKENVQLTKELAEMRSLCNNIFSLMSNYATTNATTTTTTNNSNSNQIDGSAQGSRDSAFTAVRPLDLMPVKRSSGGESWTETATAMMVEEMNPKLFGVAIGAKRAREGGGGSGGEGVVGGGGGGSSGGGREGEEDTLLRLHQPGHADVKSEPLDCQNHRDSSNQETPWLNQCHRANQRVCN 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181281g00026 370 MobiDBLite consensus disorder prediction 295 356 - -
Stsc181281g00026 370 Gene3D - 22 120 IPR036388 -
Stsc181281g00026 370 Coils Coil 186 206 - -
Stsc181281g00026 370 MobiDBLite consensus disorder prediction 161 184 - -
Stsc181281g00026 370 MobiDBLite consensus disorder prediction 1 27 - -
Stsc181281g00026 370 MobiDBLite consensus disorder prediction 224 244 - -
Stsc181281g00026 370 MobiDBLite consensus disorder prediction 161 179 - -
Stsc181281g00026 370 FunFam Heat stress transcription factor B-4 22 120 - -
Stsc181281g00026 370 Pfam HSF-type DNA-binding 30 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc181281g00026 370 SMART hsfneu3 26 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc181281g00026 370 MobiDBLite consensus disorder prediction 12 27 - -
Stsc181281g00026 370 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 22 235 IPR027725 -
Stsc181281g00026 370 MobiDBLite consensus disorder prediction 321 347 - -
Stsc181281g00026 370 SUPERFAMILY "Winged helix" DNA-binding domain 27 119 IPR036390 -
Stsc181281g00026 370 ProSitePatterns HSF-type DNA-binding domain signature. 69 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc181281g00026 370 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc181281g00026 370 PRINTS Heat shock factor (HSF) domain signature 30 53 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc181281g00026 370 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181281g00026 Stsc-Chr181281 136038 137954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181281g00026 14 370 HSF AT5G62020 45.308 4.35e-93 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc181281g00026 HSF_DNA-bind 8.8e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181281g00026 K09419 - gmx:100812267 449.129