Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181281g00019 ATGGAGGGTCACAGTGAAATGGGTCTTATTGGAGATCATTTCGATGGCGGTATGCTAGGGAGGATTAAGGAGGATGAGTTTGAAAGCCGGTCCGGTAGCGACAACTTCGAAGGTGGTGCATCTGGTGATGATCAAGAAGCTGATAATAATCAGCCAAAGAGGAAGAAGAAATACCACAGGCACACTCCTAATCAAATTCAGGAGCTTGAAGCTTTCTTCAAGGATTGTAATCATCCTGATGAGAAGCAAAGGGCAGATCTTAGTAGGAGGCTTGGCTTGGAGAATAAGCAAGTCAAGTTTTGGTTTCAAAATCGTCGAACCCAAATGAAGACACAAATCGAGCGCCATGAGAACATGATTCTTAAGCAGGAAAATGAGAAGCTCCGAGCTGAGAACAGTGTCATGAGGGATGCTATGGCAAACCCAATGTGTAACAACTGCGGCGGCGCTGCCATTCCGGGGCAAATTTCATTTGATGAGCATCAGATTAGAATTGAAAATGCTCGATTGAAGGATGAATTGAACCGTATATGTGCCTTGGCGAGCAAGTTTGTTGGCAAGCCAATCTCGGCATTGGCCAGCCCCATGTCTTTTCCTGCCTCAAACTCTGGTCTAGAGCTTGGTATTGGAAGGAATGGATTTAGTGGTGGTTCAAGTGGTCTTGGCATGTCAATGGGGCTTGATTTTGGGGACTTTTCGGGGGGCACTCTGCCTTCACTTGCCGGGATTAGACCACCGATGGGAAATGAAGTCCATGTGGAGAGATCTATGCTGTTGGAACTCGCATTAGTAGCTATGGACGAATTAATCCAGATGGCTCAGGCTAATAGCCCACTTTGGATTAAGAGTGAGGATGGTGGGAAGGAAATTCTCAACCATGAAGAGTATGCAAGAATGTCTTCTTTTATTCCTTCAACATCTCCGGGGTATGTGACTGAAGCTTCAAGAGAAACCGGTGTAGTAATAATCAACGGTCCATCCCTCGTTGAAACAATGATGGACCCGGATCGATGGTCGGAGATGTTTCCTTCAATGATTTCTAGAGCTGTAACCCTGGATGTTATAGCTAGTGGCATGGGTGGATCAAGAAATGGATCTTTGCAAGTGATGCAAGCGGAGATTCAATTGCTTTCGCCACTGGTTCCTGTTCGTCAATTGACCTTCCTGAGGTTTTGCAAGCAGCATACAGAAGGTTTGTGGGCAGTGGTAGATGCTTCAATAGATGCTGGTCACAATTTTAAGAGGCTTCCATCGGGCTTTCTTGTGCAAGATACACCCAACGGTTTCTCCAAGGCAAGTATTACTTGGGTTGAACATTCCCAATATGATGAGAGTGTCATTCACCAACTCTATCGGCCGTTGATTACTTCCGGCCTCGGCTTCGGCGCTCCTAGATGGATTGCCACCCTTCAAAGGCAGTGTGAATCCTTGGCAATCCACATGTCCTCTTCAATCTCAACCGAGGACCCCACAGCCATAAGCCCAGCTGGTAGGAGAAGCATGCTGAAGCTTGCGCAACGCATGGCTAGTAACTTCTTCTCTGGGATCTGTCTTTCTTCCTCTCAAAAATGGGACACACACCATCTTGACAATGTTGGTGATGACATGAAAGTGATGACCAGGAAGAACATTGATGTCCCCAGTGAGCCTCCTAGCATTGTCCTGTGTGCCGCCACTTCGGTTTGGATGCCGGTGTCACGGCAGAGGGTGTTTGACTTCTTGCGCGACGAACGGATGAGAGGCGAGTGGGTCATCTTATCCGGCATTGGACAAATGAAGGAGATGCTTCGCATTTCCAAGGGACAAGTTGATGGAAATTCGATATCTGTCCTTCGTGCTAATGCTAATAATGACAGCGAGAGCAGCAGCAACACACTGTTTTTGCAGGAGACATGGAACGATACTTCGTGCTCGGCGTTGGTGTATTCGCCGGTTGAGGTGGAATCACTGAAAGTGGTAATGAGTGGAGGAGATTCCACTTATGTTGCTCTCGTCCCTTCAGGCTTTATCATTCATCCAGATGGTCATTCAGGCACGGACGAAGGTGACGACGGCGGCAGGGGCGGATGCCTGCTCACAGTTGGGCTACAGATATTGCTAAACAGCCTCCCGACAGCCAAGCTCACAGCGGAGTCGGTCGAAACCGTGAACGAGCTCATCACAGGCACCATTCAGAAGATAAAAGCTGCACTAGGAGTTGAATAG 2205 0.4789 MEGHSEMGLIGDHFDGGMLGRIKEDEFESRSGSDNFEGGASGDDQEADNNQPKRKKKYHRHTPNQIQELEAFFKDCNHPDEKQRADLSRRLGLENKQVKFWFQNRRTQMKTQIERHENMILKQENEKLRAENSVMRDAMANPMCNNCGGAAIPGQISFDEHQIRIENARLKDELNRICALASKFVGKPISALASPMSFPASNSGLELGIGRNGFSGGSSGLGMSMGLDFGDFSGGTLPSLAGIRPPMGNEVHVERSMLLELALVAMDELIQMAQANSPLWIKSEDGGKEILNHEEYARMSSFIPSTSPGYVTEASRETGVVIINGPSLVETMMDPDRWSEMFPSMISRAVTLDVIASGMGGSRNGSLQVMQAEIQLLSPLVPVRQLTFLRFCKQHTEGLWAVVDASIDAGHNFKRLPSGFLVQDTPNGFSKASITWVEHSQYDESVIHQLYRPLITSGLGFGAPRWIATLQRQCESLAIHMSSSISTEDPTAISPAGRRSMLKLAQRMASNFFSGICLSSSQKWDTHHLDNVGDDMKVMTRKNIDVPSEPPSIVLCAATSVWMPVSRQRVFDFLRDERMRGEWVILSGIGQMKEMLRISKGQVDGNSISVLRANANNDSESSSNTLFLQETWNDTSCSALVYSPVEVESLKVVMSGGDSTYVALVPSGFIIHPDGHSGTDEGDDGGRGGCLLTVGLQILLNSLPTAKLTAESVETVNELITGTIQKIKAALGVE 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181281g00019 734 Pfam START domain 261 476 IPR002913 GO:0008289
Stsc181281g00019 734 SMART START_1 260 476 IPR002913 GO:0008289
Stsc181281g00019 734 MobiDBLite consensus disorder prediction 1 61 - -
Stsc181281g00019 734 SMART HOX_1 54 116 IPR001356 GO:0003677
Stsc181281g00019 734 ProSiteProfiles START domain profile. 251 479 IPR002913 GO:0008289
Stsc181281g00019 734 FunFam Homeobox-leucine zipper protein HDG1 41 128 - -
Stsc181281g00019 734 Pfam Homeodomain 55 110 IPR001356 GO:0003677
Stsc181281g00019 734 SUPERFAMILY Bet v1-like 495 716 - -
Stsc181281g00019 734 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Stsc181281g00019 734 MobiDBLite consensus disorder prediction 17 32 - -
Stsc181281g00019 734 CDD homeodomain 55 112 IPR001356 GO:0003677
Stsc181281g00019 734 Coils Coil 106 141 - -
Stsc181281g00019 734 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 51 731 IPR042160 -
Stsc181281g00019 734 SUPERFAMILY Homeodomain-like 38 112 IPR009057 -
Stsc181281g00019 734 Gene3D - 41 128 - -
Stsc181281g00019 734 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Stsc181281g00019 734 SUPERFAMILY Bet v1-like 254 477 - -
Stsc181281g00019 734 CDD START_ArGLABRA2_like 255 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181281g00019 Stsc-Chr181281 103580 106947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181281g00019 25 731 Homeobox Transcription Factor Family AT3G61150 55.646 0.0 787
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc181281g00019 START 2.6e-38 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181281g00019 K09338 - gmx:100794400 1009.59