Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181281g00016 ATGGGGTTTCTCCGGCGACTCTTCGGCGGCGGTGGAAAGAAGAAGAACCACCACAATGATGGGTCGGGTCAAAAACCCGGAAAGGAGAAACGGAGCTGGAGCTTCGTGAAACAGAGCAGCAGAGATAACAAATCCAACAACAACAATAACAATAACGGTTACGACAACTTCACCGACAACTTGGACCCAAACAAACACGCCATCGCCGTCGCCGCCGCCACCGCCGCCGTAGCTGAGGCAGCTCTCGCAGCCGCACACGCCGCAGCAGAGGTTGTCAGGCTCACCAGTGGCTCCGGGGCAGCTACTCCGGCGCAGGTCCAGCACCGGCTGGCGGCGGAAATCGCCGCCGTGAAAATACAGTCGGCGTTCCGCGGTTACTTGGCAAGGAGGGCATTGAGAGCACTTAAAGCATTGGTGAAGTTACAAGCACTGGTGAGAGGCCACATTGTGAGGAAGCAAAGTGCAGATATGCTGAGGCGCATGCAAACATTGGTGCGCCTCCAGGCTCGCGCACGTGCGAGTCGCGTGCACTTGTCCGACAACATGCCATCTTTCAAGTCTTCACTTTCTCATTACCCTGTTCCTGAAGATTATGAGCATCCGCTTCGTGCTTATAGCACAAAATTTGATGGATCTTCAATCCTCAAGAGATGTTGCTCCAATTCAAATTTTAGGGACATCGAGTTAGAGAGAGCCCGATTCGGTTCGAGTTGGTTAGACAGTTGGATGGAACAAAGTACGTGGAGCCAAACCGGCAACGCTTCGGTGAGAAACAGGCACATTGATGACGAGAAGAGTGACAAGATTCTTGAAGTCGACACTTGGAAGCCGCATATGAATTCCTACAATAACAGTAGCAGCTCATTCAAGGCGCCACAGCGTTATTTCGCTCAAGATTACAATGACAACCTTCTTATGACATATGAATCTCCATCGAAACGTTCTTCGAAAGCGCTAAATCCAAGTCACTCATCTAGGGAAGTGTTACCCTTAGGTTCTCCTAGATTCCAGAAAGGAAAAGAAGCGATGATCAGTTCAAGAACCGCAGAGAGTAGTCCGCAAGCATTTTCGGCGTCATCTAGGCTTGGTAATGGTGGAAGGAGAGGCCCTTTTACACCAACAAAGATTTTAGATTATAATCTGTAA 1146 0.5017 MGFLRRLFGGGGKKKNHHNDGSGQKPGKEKRSWSFVKQSSRDNKSNNNNNNNGYDNFTDNLDPNKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSGSGAATPAQVQHRLAAEIAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQSADMLRRMQTLVRLQARARASRVHLSDNMPSFKSSLSHYPVPEDYEHPLRAYSTKFDGSSILKRCCSNSNFRDIELERARFGSSWLDSWMEQSTWSQTGNASVRNRHIDDEKSDKILEVDTWKPHMNSYNNSSSSFKAPQRYFAQDYNDNLLMTYESPSKRSSKALNPSHSSREVLPLGSPRFQKGKEAMISSRTAESSPQAFSASSRLGNGGRRGPFTPTKILDYNL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181281g00016 381 MobiDBLite consensus disorder prediction 344 361 - -
Stsc181281g00016 381 MobiDBLite consensus disorder prediction 311 327 - -
Stsc181281g00016 381 MobiDBLite consensus disorder prediction 311 381 - -
Stsc181281g00016 381 ProSiteProfiles IQ motif profile. 136 163 IPR000048 GO:0005515
Stsc181281g00016 381 ProSiteProfiles IQ motif profile. 112 140 IPR000048 GO:0005515
Stsc181281g00016 381 SMART iq_5 111 133 IPR000048 GO:0005515
Stsc181281g00016 381 SMART iq_5 134 155 IPR000048 GO:0005515
Stsc181281g00016 381 Pfam IQ calmodulin-binding motif 136 153 IPR000048 GO:0005515
Stsc181281g00016 381 Pfam IQ calmodulin-binding motif 115 133 IPR000048 GO:0005515
Stsc181281g00016 381 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 157 IPR027417 -
Stsc181281g00016 381 MobiDBLite consensus disorder prediction 1 58 - -
Stsc181281g00016 381 Gene3D - 112 165 - -
Stsc181281g00016 381 PANTHER IQ-DOMAIN 5-RELATED 16 345 - -
Stsc181281g00016 381 MobiDBLite consensus disorder prediction 13 37 - -
Stsc181281g00016 381 MobiDBLite consensus disorder prediction 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181281g00016 Stsc-Chr181281 81945 87229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181281g00016 1 279 IQD Protein Family AT5G07240 49.829 1.05e-41 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181281g00016 - - adu:107491176 442.58