Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181280g00025 ATGATCATGGACTTCCAAGTCGTTGTCCTCGCCGGTGGCGTCTCCAAGAAACTCCTCCCTCTCGTTTCCAAGGAGATTCCGAACGCGTTGCTTCCGGTGGCGAACAGGCCTGTTATCTCTTACGTGCTCGAGCTTTTGGAGCTTAGCAACCTCAAAGATCTCATTGTGGTAGTCGAAGGAGAAGATGCCGCTCTTCATGTTGGGGGCTGGATATCAGCAGCTTATGCTGATCGCCTCCATGTTGAGGTTGCTGCAGTTCCTGAGGATGTAGGAACTGCTGGTGCTATTCGGGCGATTGCACACCACCTAACTGCTAAGGACATATTGGTTGTCAGTGGTGATCTTGTTTCTGATGTGCCACTTGGTGCAGTTGCAGCTACTCATAGGCGGCATGATGCTGTTGTCACTGCTATGCTTTGTTCTGCTCCTGTAAGTGGGCCTTCAGAGTCAGGATCCTCTGGTGGAAAAGACAAAACCAAGAAACCTGGCCGCTATAACTTGATAGGGTTGGATCCCACACAACAGTTCTTACTTCACATAGCAACTGGAGCTGAAGTTGAAAAAGATCTCCGAGTTCAGAAGAGCATACTCCGTGCAGCTGGCCAGATAGAAATCAGAGCTGATCTAATGGATGCTCACTTGTATGCATTCAAAAGATCAGTTCTACAAGAAGTTTTAGATCAAAAGGGTACATTTCATAGCCTAAAACATGATGTATTGCCATATCTTGTCCGGAGCCAACTGAAATCAGAAGCATTACTGAATGGCATATCACAAGTAGAAGAAAATGGAACCGAGAAGATTATTGCTCAAAGCAGTCAACAAATGCTATCTCAAATACTTGCTAATGCATCTGAGCAGACGTTTCATCAACGATATGTTCTGGGCCCTAATGGCACATCTTTTAGAAAAACCCATAAATGTTGTGTTTATATTGCTGGAAGCAACAAGTACTGTGCGCGCCTAAATTCTATACAAGCATACAGTGATATAAATCGAGATGTGATAGGAGAAGCTAATCATTTGTCAGGGTATTCATTCTCTGCTCATAATAACATTATCCATCCTTCGGCAGAACTTGGAGCAAAAACAACTGTAGGACCACATTGTATGCTGGGGGAAGGTTCACAGATGGGTGACAAATGCAGTGTGAAACGGTCTGTCATTGGCCGTCACTGCAGGATAGGTGCAAATGTTAAGGTTGTTAATTCAGTAGTTATGAATCATGTTACCATTGGTGACTGTTGTTCAATCCAAGGTTCCGTGATCTGCAGCAATGTACAGCTACAAGAACGTGCCGTACTAAAAGATTGTCAAGTTGGAGCAGGTTTTGTGGTTGCTGCTGGTAGTGAGTGCAAAGGGGAGATCTTAGCTAAGAAATGA 1383 0.4461 MIMDFQVVVLAGGVSKKLLPLVSKEIPNALLPVANRPVISYVLELLELSNLKDLIVVVEGEDAALHVGGWISAAYADRLHVEVAAVPEDVGTAGAIRAIAHHLTAKDILVVSGDLVSDVPLGAVAATHRRHDAVVTAMLCSAPVSGPSESGSSGGKDKTKKPGRYNLIGLDPTQQFLLHIATGAEVEKDLRVQKSILRAAGQIEIRADLMDAHLYAFKRSVLQEVLDQKGTFHSLKHDVLPYLVRSQLKSEALLNGISQVEENGTEKIIAQSSQQMLSQILANASEQTFHQRYVLGPNGTSFRKTHKCCVYIAGSNKYCARLNSIQAYSDINRDVIGEANHLSGYSFSAHNNIIHPSAELGAKTTVGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGANVKVVNSVVMNHVTIGDCCSIQGSVICSNVQLQERAVLKDCQVGAGFVVAAGSECKGEILAKK 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181280g00025 460 Gene3D Hexapeptide repeat proteins 350 457 - -
Stsc181280g00025 460 MobiDBLite consensus disorder prediction 143 163 - -
Stsc181280g00025 460 SUPERFAMILY Nucleotide-diphospho-sugar transferases 6 426 IPR029044 -
Stsc181280g00025 460 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT GAMMA 3 460 - -
Stsc181280g00025 460 Pfam Nucleotidyl transferase 8 149 IPR005835 GO:0009058
Stsc181280g00025 460 CDD LbH_eIF2B_gamma_C 371 451 - -
Stsc181280g00025 460 CDD eIF-2B_gamma_N 5 222 - -
Stsc181280g00025 460 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 2 349 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181280g00025 Stsc-Chr181280 136052 140263 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181280g00025 5 451 Eukaryotic Initiation Factors Gene Family AT4G18300 22.199 1.66e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181280g00025 K03241 - gmx:100783346 772.696