Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181280g00014 ATGGCGGGGGTTTCTCTCCAGTGTGGTGACTGTGGCACTCTCTTGAGGTCCGTAGAGGAAGCTCAACAGCATGCCGAGCTAACCAACCACTCCAACTTCTCTGAATCCACCGAAGCAGTTCTCAACCTCGTCTGCACTGCTTGCGGCAAACCCTGCCGATCCAAAACCGAGAGTGATTTGCATACGAAAAGAACCGGGCATACTGAGTTTGTAGATAAGACTTCCGAGGCAGCAAAACCGATAAGTTTAGAAGCTCCAAAGGCAGATGAAACTGCTACATCAGAAGAGGCTCCCAATGCAGATGCAAGCCAACATGAAGAAATGGTTGTTCCTGAGGTTGACAAAAAGCTTGTTGAGGAACTCGAAGCAATGGGATTTTCTACAGCTCGAGCAACACGTGCACTTCATTATTCTGGTAATGCTAGCATCGAGGCTGCCATTAATTGGATAGTAGAGCATGAGTCTGACCCTGACATAGACCAGATGCCCTTGGTACCTGCCAATACCAAAGTTGAGGCTCCTAAACCTTCTCTCACCCCAGAAGAATTGAAGGCTAAACAACAGGAACTAAGGGAGAGAGCTCGCAAGAAGAAAGAAGAGGAAGAAAGGAGAATGGAAAAAGAAAGAGAGAAGGAGAGAATTCGCATTGGCAAGGAGTTGTTGGAAGCAAAGAGGATTGAAGAAGAGAATGAGAGAAAACGGTTGCTTGCATTGCGAAAAGCAGAGAAAGAGGAAGAGAGAAGGGCTAGAGAGAAAATCAAGCAGAAGTTAGAAGAAGACAAGGCTGAAAGAAGGCGAAAACTTGGATTGCCTCCAGAAGAACCTGCGGAAGCCAAACCCTCAACTGTTGTAGAGGAGAAAAAGAGTTTTCTGCCAGTTAGGCCTGCCACCAAAGCTGAACAAATGAGAGAGTGCCTGCGTTCTCTCAAGCAGAACCACAAGGAGGATGATGCCAGAGTAAAGAAAGCATTCCAAACCCTCCTCACTTATGTGGGAAATGTTGCCAGAAATCCTGATGAGGAAAAATTCAGGAAAATCCGACTTAGTAACCAAACTTTTCAGGAACGAGTTGGAGCGTTGAAGGGGGGAATTGAATTCCTGGAGATTTGTGGATTTGAGAAGATTGATGGCGGCGAGTTTTTGTTTTTGGCTAGGGACAAAGTTGAAATGGCAGTTCTGAATTCAGCTGGGTCTGAACTAGATTCAGCAATTAAGAATCCCTTCTTTGGAGTTCTTTAG 1239 0.4584 MAGVSLQCGDCGTLLRSVEEAQQHAELTNHSNFSESTEAVLNLVCTACGKPCRSKTESDLHTKRTGHTEFVDKTSEAAKPISLEAPKADETATSEEAPNADASQHEEMVVPEVDKKLVEELEAMGFSTARATRALHYSGNASIEAAINWIVEHESDPDIDQMPLVPANTKVEAPKPSLTPEELKAKQQELRERARKKKEEEERRMEKEREKERIRIGKELLEAKRIEEENERKRLLALRKAEKEEERRAREKIKQKLEEDKAERRRKLGLPPEEPAEAKPSTVVEEKKSFLPVRPATKAEQMRECLRSLKQNHKEDDARVKKAFQTLLTYVGNVARNPDEEKFRKIRLSNQTFQERVGALKGGIEFLEICGFEKIDGGEFLFLARDKVEMAVLNSAGSELDSAIKNPFFGVL 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181280g00014 412 MobiDBLite consensus disorder prediction 255 284 - -
Stsc181280g00014 412 Coils Coil 183 263 - -
Stsc181280g00014 412 SUPERFAMILY PUG domain-like 294 408 IPR036339 -
Stsc181280g00014 412 SMART uba_6 114 152 IPR015940 -
Stsc181280g00014 412 Pfam UBA/TS-N domain 117 150 IPR015940 -
Stsc181280g00014 412 CDD UBA_PUB_plant 112 160 - -
Stsc181280g00014 412 Gene3D - 300 402 - -
Stsc181280g00014 412 MobiDBLite consensus disorder prediction 255 287 - -
Stsc181280g00014 412 SUPERFAMILY UBA-like 95 166 IPR009060 GO:0005515
Stsc181280g00014 412 PANTHER F13M7.16 PROTEIN 1 412 - -
Stsc181280g00014 412 CDD PUB_UBA_plant 306 412 - -
Stsc181280g00014 412 Gene3D - 114 160 - -
Stsc181280g00014 412 MobiDBLite consensus disorder prediction 171 211 - -
Stsc181280g00014 412 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Stsc181280g00014 412 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 112 153 IPR015940 -
Stsc181280g00014 412 MobiDBLite consensus disorder prediction 177 211 - -
Stsc181280g00014 412 SMART PGNneu 322 385 - -
Stsc181280g00014 412 MobiDBLite consensus disorder prediction 73 107 - -
Stsc181280g00014 412 Pfam PUB domain 319 389 IPR018997 -
Stsc181280g00014 412 ProSitePatterns Zinc finger C2H2 type domain signature. 45 67 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181280g00014 Stsc-Chr181280 75029 79663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181280g00014 106 412 C2H2 Transcription Factor Family AT1G04850 80.000 8.05e-152 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181280g00014 K24348 - gmx:100794687 642.114