Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181280g00004 ATGTCAACAAAAAGTTTGGATTCTTCTTCTTCTGAATCCTCTAGCATCTCTGGCACCTCCGAAGGGAAGGATCACACACTGCTTAGTGTTGATAACAACAACACAATGGACAATGATCAAGCCTCGAATTCCGATGATAATAATGGTAATTCACGAACAATGCTGGATTTTGTGAAGCTCTCCAACAATGTTTCATCGATTCGTTGTTCTTCCAATGTGCAAGAAATTGATTTTTTCAATGGCGGGAAAAAGGTGATGGGATCATCATCTTCTTGGGCTAAAAGCATTGACAAAGGAAGAGATGAAAACAGCGAAGAGAGGACTTCTGAGACGAAAACTTTCTCTTGCAATTTCTGTAAGAGAGAGTTTGCGTCCTCACAAGCCCTCGGAGGGCACCAGAATGCCCACAAACAAGAGCGTGCGATAGCGAAACGTCGGCAAGGGATGGGCACGGATGCTCTTGGTCACCTTCACTTTCCATATTACCCTTACACTAGCTTTCCCACAAACCCTTTTTATGGGTCCTACAATAGGGCACTTGGCGTAAGAATGGAGTCCATGATTCACAAACCTTCTTATCCTTGGTCTTCTGGCCTTAGATTTGGTCGTAGTCATAATTGGTCAACGCAAGGGATTCTAAGTTCATCATCATCATTAGCACTTGATAGATTAAGTATTGAAGGTTTGCAACCAAAAATGAATGAAGGTGGGGTTAGTGGAATTCAAGCAAGTTCTTCAATTTTGAAGATAGAAGATGATAATGGTGGTGATAATGGAACTGCTCCCCAATTAGGAGATTCTTCTACGAACAATGTTGCTGCAAATCTCACTCACCATGGCACGGATGATCATGATCCCAAGCCAGATAATGAACCCTCTAGTTCAGAGTCTCCAGAGCTTGATCTGTCACTTAAGCTTTAA 921 0.4235 MSTKSLDSSSSESSSISGTSEGKDHTLLSVDNNNTMDNDQASNSDDNNGNSRTMLDFVKLSNNVSSIRCSSNVQEIDFFNGGKKVMGSSSSWAKSIDKGRDENSEERTSETKTFSCNFCKREFASSQALGGHQNAHKQERAIAKRRQGMGTDALGHLHFPYYPYTSFPTNPFYGSYNRALGVRMESMIHKPSYPWSSGLRFGRSHNWSTQGILSSSSSLALDRLSIEGLQPKMNEGGVSGIQASSSILKIEDDNGGDNGTAPQLGDSSTNNVAANLTHHGTDDHDPKPDNEPSSSESPELDLSLKL 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181280g00004 306 MobiDBLite consensus disorder prediction 278 294 - -
Stsc181280g00004 306 MobiDBLite consensus disorder prediction 86 110 - -
Stsc181280g00004 306 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 306 IPR044246 GO:0009788
Stsc181280g00004 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 141 IPR013087 -
Stsc181280g00004 306 SUPERFAMILY beta-beta-alpha zinc fingers 111 141 IPR036236 -
Stsc181280g00004 306 MobiDBLite consensus disorder prediction 95 109 - -
Stsc181280g00004 306 MobiDBLite consensus disorder prediction 1 50 - -
Stsc181280g00004 306 ProSitePatterns Zinc finger C2H2 type domain signature. 116 136 IPR013087 -
Stsc181280g00004 306 Gene3D Classic Zinc Finger 91 155 - -
Stsc181280g00004 306 MobiDBLite consensus disorder prediction 260 277 - -
Stsc181280g00004 306 MobiDBLite consensus disorder prediction 249 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181280g00004 Stsc-Chr181280 22856 23776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181280g00004 108 208 C2H2 Transcription Factor Family AT5G10970 52.427 1.58e-23 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181280g00004 - - ahf:112735686 304.293