Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181279g00037 ATGGTGAACAACCAAAAGGATCAACATGGGCCTTCAAAACAACCTCTTTCTGAGCCTTTTCCGGTGGGTATGCGTGTTCTTGCTGTTGACGACGATCGAGTTTGTCTCAGAACGTTGGAGCAGATGCTTATCAAATGCCGTTATAATGTTACTGCTACAACTCAATCAAGAAAGGCGATAGAGATGCTAAGGGAAAACAAAGACAAATTTGACCTTATTATAAGTGATGTGAATATGCCAGACATTGATGGCTTTAAGCTTCTTGAACTAGTGGGGCTTGAGATGGACCTACCAGTTATAATGGTGACAGAACACAAGGAGCCAAATTTGGTGAAGAAGGGTGTTGTGCATGGGGCATGTGACTATTTGCTGAAACCAGTTAGAATGGAAGAATTACAGATCATATGGAGACATGTATTTAGAAGGAAGGTCGATCACAAGGATCACAAGGCTTGTAATGTGGCTGGACAGGGTATTCAAGGAGTTGTAATAGAAAATTGTGCTAACCATGATAACAAAAGGTTGGATAAAAGAAGGAGGGAGCAATCTGAAGAGGAGGAAGAAGATGCTGATGATTATGAACAAGAGAATGAGAACACTTCTACTCATAAGAAGCCTCGTTTGGTGTGGGATGATGAGCTGCGTAGGAAATTCCAAGCTGCAGTAAACCAACTGGGCCTTGATAAAGCTGTTCCTAAGAAAATTCTTATGCTGATGAATGTGGAAGGGGTCACAAGGGAAAATGTGGCAAGCCATCTTCAGAAATACAGGATGAATCTAAGAAGGGCAGCTCAACAAGGTAGAACAGTTGCTGCATCTGATCCTTACTTGCATATGCCATTGCTGGATCCGTATGCATCCGGATCAGGAAGGCTCCCAACCACCGGAATAACATCATATGCATCCGGTGGAATCTATTCAAGGTTGCACTCCTCACATGCCTTGAACTTGAGAGGAATGAGTTCTTCTGTGCTGTTTCGGCCGGATAATTCCCAAAACATGATCGACTCCATAAAAGGACTCGGCAACATCCAGCCAAACTTTTTCTCCACAAATCAAAGCTCCAATTTTATGCAGGGAATTCCAGCAGCAAATGAACCTTACCATTTTCAACAGAATAACTATTGGACTGGTATTAGGCCGTTGAACCCAGCTGATATTTCAAGTGATAATGCTTTATCCGGATTCACAAGTAATAATTCACTGTTACAAGGAAATTATCCAGCAACTCATCATTTGAATTCATTAAGAAATCAGTCTCCTCTGGAAGCTGCTTATGTGAGAGCAGGCTCATTCGACCAAAATGAGGCTACTTTTTCAGTCAACCACGATCAGAACAGTAAAGTTGAGTGTGACTTTGATCCTTTGGGAATTATATTTGATGCTGACTATACTATTGGATCATGCATCTAA 1413 0.4168 MVNNQKDQHGPSKQPLSEPFPVGMRVLAVDDDRVCLRTLEQMLIKCRYNVTATTQSRKAIEMLRENKDKFDLIISDVNMPDIDGFKLLELVGLEMDLPVIMVTEHKEPNLVKKGVVHGACDYLLKPVRMEELQIIWRHVFRRKVDHKDHKACNVAGQGIQGVVIENCANHDNKRLDKRRREQSEEEEEDADDYEQENENTSTHKKPRLVWDDELRRKFQAAVNQLGLDKAVPKKILMLMNVEGVTRENVASHLQKYRMNLRRAAQQGRTVAASDPYLHMPLLDPYASGSGRLPTTGITSYASGGIYSRLHSSHALNLRGMSSSVLFRPDNSQNMIDSIKGLGNIQPNFFSTNQSSNFMQGIPAANEPYHFQQNNYWTGIRPLNPADISSDNALSGFTSNNSLLQGNYPATHHLNSLRNQSPLEAAYVRAGSFDQNEATFSVNHDQNSKVECDFDPLGIIFDADYTIGSCI 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181279g00037 470 SUPERFAMILY Homeodomain-like 202 262 IPR009057 -
Stsc181279g00037 470 Gene3D - 201 263 - -
Stsc181279g00037 470 FunFam Two-component response regulator 201 264 - -
Stsc181279g00037 470 MobiDBLite consensus disorder prediction 175 205 - -
Stsc181279g00037 470 Gene3D - 23 155 - -
Stsc181279g00037 470 NCBIfam myb-like DNA-binding domain, SHAQKYF class 205 258 IPR006447 GO:0003677
Stsc181279g00037 470 Pfam Response regulator receiver domain 26 133 IPR001789 GO:0000160
Stsc181279g00037 470 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Stsc181279g00037 470 SUPERFAMILY CheY-like 23 148 IPR011006 -
Stsc181279g00037 470 PIRSF RR_ARR_type-B 1 454 IPR017053 GO:0003677|GO:0003700|GO:0009736
Stsc181279g00037 470 SMART REC_2 24 136 IPR001789 GO:0000160
Stsc181279g00037 470 CDD REC_typeB_ARR-like 26 140 - -
Stsc181279g00037 470 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 342 IPR045279 GO:0009736
Stsc181279g00037 470 Coils Coil 176 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181279g00037 Stsc-Chr181279 154096 155960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181279g00037 20 374 Response Regulator Gene Family AT2G25180 46.757 2.25e-94 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc181279g00037 Response_reg 8.1e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181279g00037 K14491 - gmx:100776075 429.098