Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181279g00029 ATGCTTAACCAATCCTCTCATAGAAAATCCTTCATTCATTCTTCCATTGTAACAGCAAGGTCACATGGTTTTCAAGGCATAGATCTTTATGAAGCATCCCCAAGACCAGCTTCAGAGCTTGCCGATTTCGGTAGCCTTTTAGAGGAATGGCGAGCTGCAATAACTTCTGAGGCAAGAAACTCTAGCAAACCAGAGTTATTGTTAGTGATGGCGGGTTACTACCTTAGAGCTTCTGATTCTACGAGTTACCCTTTCGATTCAATGCAGAGGAACTTGGATTGGGTGCATTTTGTTGCATATGATTACTATGTTCCTACAAAGAACAATGTCACAGGTTTTCATGCAGCTTTATATGGTCCAACTAATTGGGACAACACTGATTCTGGTATCAAAGAATGGAGAAGAAGGGGATTCTCCTCTAACAAGCTTCTAATTGGGTTGCCTTATCATGGATATGCATGGACACTTGTAAATCCAGGGGAGAGTTGTATTGCGGCACCGGCTTCGGGACCTGCCATTACAATGGATGGTTCCATGGGCTATAAGTTGATAAAGAGTTTTGTTAGAAGCTTTGGAAACAATGGTGTTGTTTCAAGATTTAATGATACTTTTGTGGTGGATCAGTTCACAGTTGCATCCACCACTTGGGTTGATTTTGATGATGTGGATTCAATCAGAGCCAAAGTTTCTTATGCCAAGGAAAAGGGACTTCTTGGCTACAATGTGTTCCAAGTTGCCAATGATGACAACTGGGAACTTTCAAAGGCAGCTCAAGAAGTAGATGAAGATAATCATCTGAAGAGGTTGTTGATAATTGTTCTGCTCTCAACAGTAGCTGTCATAATTCTTTTGGGAATAGTGTTTTGCTACTGCCACGGAGGAACCTCAGCCACTATTAAAAAAGCATTATACCAAATAAGGGAATGTTTATCAGGAGCTGAACAAGATCAAGTAGAAGGAAGAAATGGTTCTGATTTGACTGCATTCAGTTATCTCACAATTAAGATGGCAACAAATAACTTCTCAAGTGATAATAAACTTGGAGAGGGTGGATTTGGCAGAGTTTATAAGGGAAAATTGCGAAAGGGGCAGGAGATAGCTGTGAAAAGGCTCTCAGAAAGCTCGAATCAAGGCCTAGAAGAGTTCAAAAATGAAATCGCGCTTACAGCAAGACTACAACATGTGAATTTAGTTAGACTTCTGGGTTACTGCACAAAAAGGGATGAAAAGATTTTGATCTATGAATACCTACCAAACAAAAGCTTAGATCATTTCCTCTTTGATCCAAGGAAATCAATTCTTTTAGACTGGAGCAAGCGTGCTAACATCATTGAAGGGGTTACTCAAGGCCTTCTTTATCTCCAAGAGTACTCAAATTTCACCATAATCCACCGAGATCTCAAAGCCAGTAATGTTTTATTAGACCATAAGATGAATCCCAAGATATCAGATTTCGGCATGGCAAGAATTTTTAGGAAATATGACCTTGAAGCAAACACAAGCAGGATTGTTGGGACATAG 1521 0.3997 MLNQSSHRKSFIHSSIVTARSHGFQGIDLYEASPRPASELADFGSLLEEWRAAITSEARNSSKPELLLVMAGYYLRASDSTSYPFDSMQRNLDWVHFVAYDYYVPTKNNVTGFHAALYGPTNWDNTDSGIKEWRRRGFSSNKLLIGLPYHGYAWTLVNPGESCIAAPASGPAITMDGSMGYKLIKSFVRSFGNNGVVSRFNDTFVVDQFTVASTTWVDFDDVDSIRAKVSYAKEKGLLGYNVFQVANDDNWELSKAAQEVDEDNHLKRLLIIVLLSTVAVIILLGIVFCYCHGGTSATIKKALYQIRECLSGAEQDQVEGRNGSDLTAFSYLTIKMATNNFSSDNKLGEGGFGRVYKGKLRKGQEIAVKRLSESSNQGLEEFKNEIALTARLQHVNLVRLLGYCTKRDEKILIYEYLPNKSLDHFLFDPRKSILLDWSKRANIIEGVTQGLLYLQEYSNFTIIHRDLKASNVLLDHKMNPKISDFGMARIFRKYDLEANTSRIVGT 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181279g00029 506 SUPERFAMILY Protein kinase-like (PK-like) 324 506 IPR011009 -
Stsc181279g00029 506 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 232 506 - -
Stsc181279g00029 506 SMART 2g34 1 248 IPR011583 GO:0008061
Stsc181279g00029 506 ProSiteProfiles Protein kinase domain profile. 341 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181279g00029 506 Pfam Protein kinase domain 342 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181279g00029 506 Pfam Glycosyl hydrolases family 18 2 248 IPR001223 GO:0005975
Stsc181279g00029 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Stsc181279g00029 506 SMART serkin_6 341 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181279g00029 506 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 417 506 - -
Stsc181279g00029 506 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524
Stsc181279g00029 506 SUPERFAMILY (Trans)glycosidases 1 250 IPR017853 -
Stsc181279g00029 506 Gene3D Glycosidases 1 250 - -
Stsc181279g00029 506 Gene3D Phosphorylase Kinase; domain 1 305 416 - -
Stsc181279g00029 506 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 1 264 IPR001223 GO:0005975
Stsc181279g00029 506 FunFam Uncharacterized protein 317 416 - -
Stsc181279g00029 506 Gene3D Transferase(Phosphotransferase) domain 1 417 506 - -
Stsc181279g00029 506 Gene3D - 149 219 IPR029070 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181279g00029 Stsc-Chr181279 126246 128185 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181279g00029 269 506 Receptor kinase-like Gene Family AT4G04500 51.261 6.25e-73 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc181279g00029 Glyco_hydro_18 7.6e-40 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181279g00029 - - aip:107617480 841.262