Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181279g00028 ATGTCTCTAATGACTTCATACTTGTTTTGCAGCGGCTATGTACCTCCTGAGTATGTGAGAAAAGGAATATACTCGACCAAGTACGATGTTTATAGCTTTGGAGTTCTTCTGTTGCAAATCATAAGTGGGAAGAGGACTTCATGTTACTACGGACCACATGAAAATATGAACCTGTTGGAATATGCTTATGAGCTGTGGATGGAGGGAAGAGGTGTGGAATTTTTAGAGCCTTCATTAGATGATACAACATCAGCATGTAAACTCATGAGATGCATGCAAGTAGCTCTTTTGTGTGTTCAAGAGAATTCTGCAGATAGACCTTCCATGTTGGAAGTGGATTCAATCCTCAAGAATGAAACTGCAGCTATTGGTATTCCCAACATGCCTGGTTTCTCTGTGAAGAATCATGGAGATGGTGAGGAAGAAAGACACATAAAATATGTTTCAATCAATGATGTTACAATTTCTCAAATGACACCAAGATGA 486 0.3909 MSLMTSYLFCSGYVPPEYVRKGIYSTKYDVYSFGVLLLQIISGKRTSCYYGPHENMNLLEYAYELWMEGRGVEFLEPSLDDTTSACKLMRCMQVALLCVQENSADRPSMLEVDSILKNETAAIGIPNMPGFSVKNHGDGEEERHIKYVSINDVTISQMTPR 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181279g00028 161 Gene3D Transferase(Phosphotransferase) domain 1 1 124 - -
Stsc181279g00028 161 Pfam Protein tyrosine and serine/threonine kinase 11 113 IPR001245 GO:0004672|GO:0006468
Stsc181279g00028 161 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 12 159 - -
Stsc181279g00028 161 SUPERFAMILY Protein kinase-like (PK-like) 4 127 IPR011009 -
Stsc181279g00028 161 ProSiteProfiles Protein kinase domain profile. 1 116 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181279g00028 Stsc-Chr181279 125584 126634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181279g00028 12 161 Receptor kinase-like Gene Family AT4G11530 38.125 4.19e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc181279g00028 PK_Tyr_Ser-Thr 2.5e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181279g00028 - - aprc:113847882 254.218