Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181279g00024 ATGGCTTCCGGTGACATCTCTTTTGAGGATCTTAAGAATGAGAATGTGGACCTGGAGAACATTCCTATTGAGGATGTATTCAAGCAATTGAAATGCAGCAGGGAGGGATTGACATCAGCTGAAGGAGAGAAGAGGCTACACATCTTCGGTTACAACAAACTGGAAGAGAAAAAGGAAAGCAAGCTGCTTAAATTCTTGGGTTTCATGTGGAATCCATTGTCATGGGTCATGGAGGCTGCTGCCATCATGGCCATTGTATTGGCCAATGGCGGGGGCAAGCCACCGGATTGGCAAGATTTCCTTGGTATTGTGGTGTTGCTTATCATCAACTCAACAATTAGTTTCATTGAGGAAAACAGTGCAGGCAATGCTGCAGCAGCTTTGATGGCTGGTCTTGCACCCAAAACCAAGGTGTTGAGAGATGGAAAATGGAGTGAGCAAGAAGCTGCAATCTTGGTGCCAGGAGACTTGATCAGCATCAAGTTAGGAGATATCGTCCCGGCCGATGCTCGTCTTTTGGAAGGTGATCCCTTAAAGATTGACCAAGCTGCCCTCACAGGTGAGTCATTGCCAGTCACCAAGAACCCTGGTGATGAGGTCTTCTCTGGTTCCACATGCAAACAAGGTGAGATTGAGGCTGTTGTCATTGCCACCGGAGTCCACACCTTCTTCGGCAAGGCTGCTCATCTTGTTGACAGCACCAACAATATTGGTCACTTCCAACAGGTACATATCATATCCATTTCTTTATTTTCATTAACAGCAGCATGA 771 0.4643 MASGDISFEDLKNENVDLENIPIEDVFKQLKCSREGLTSAEGEKRLHIFGYNKLEEKKESKLLKFLGFMWNPLSWVMEAAAIMAIVLANGGGKPPDWQDFLGIVVLLIINSTISFIEENSAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDLISIKLGDIVPADARLLEGDPLKIDQAALTGESLPVTKNPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNNIGHFQQVHIISISLFSLTAA 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181279g00024 256 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Stsc181279g00024 256 FunFam Plasma membrane ATPase 134 218 - -
Stsc181279g00024 256 NCBIfam HAD-IC family P-type ATPase 103 251 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc181279g00024 256 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Stsc181279g00024 256 Gene3D - 134 218 - -
Stsc181279g00024 256 PANTHER CALCIUM-TRANSPORTING ATPASE 19 243 - -
Stsc181279g00024 256 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 241 IPR023298 -
Stsc181279g00024 256 Pfam E1-E2 ATPase 133 241 - -
Stsc181279g00024 256 SUPERFAMILY Calcium ATPase, transduction domain A 134 231 IPR008250 -
Stsc181279g00024 256 Gene3D - 96 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181279g00024 Stsc-Chr181279 114474 115640 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181279g00024 3 243 Primary Pumps ATPases AT2G07560 85.477 9.51e-136 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181279g00024 K01535 - gmx:100778065 421.009