Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181279g00023 ATGGCTATTGGCTCTCACCGCCTTTCCCAGCAAGGAGCTATCACCAAGAGAATGACTGCCATTGAAGAAATGGCAGGTATGGATGTTCTCTGCAGTGACAAGACTGGAACTCTCACCCTTAACAAGCTTACCGTTGACAAGGACTTGATTGAGGTCTTCCCCTCTAATGTGGATAGGGACACTCTTGTCTTGTATGCTGCCAGGGCTTCCAGGGTTGAAAACCAGGATGCCATTGATGCTTCAATTGTTGGAATGTTGAGTGACCCCAAGGAGGCAAGAGCAGGAATCACTGAGGTGCATTTCTTGCCTTTCAATCCTGTGGAGAAGCGCACAGCCAATACCTACATTGATAGCAATGGAGACTGGCACAGAAGCAGCAAGGGTGCTCCTGAGCAAATTATTGAACTGTGTAACCTCAAGGGAGAGACTTTGAAGAAGGCTCATAAGATCATTGATGACTTTGCTAACCGCGGTCTACGTGCATTGGGTGTTGCACGCCAGACTGTTTCAGCAAAGTGCAAGGAAAGTGAAGGAGAGCCATGGGAATTGTTAGGCTTGTTGCCTCTTTTTGACCCTCCAAGGCATGATAGTGCAGAGACTATCCGTCGTGCTCTTGACCTCGGTGTGAATGTTAAGATGATCACTGGTGACCAACTTGCCATTGGCAAAGAAACCGGTCGCAGGCTCGGAATGGGAACCAACATGTACCCTTCATCCTCCCTCCTTGGTGCTAGCAAAGACCCTTCCATTGCATCCATTCCAATTGATGAACTCATTGAGAAGGCTGACGGATTCGCCGGAGTGTTCCCAGAGCACAAATATGAGATTGTGAAGAGGCTTCAGGACAAGAAACACATTGTAGGAATGACTGGAGATGGTGTGAACGATGCACCGGCACTTAAGAAGGCAGATATTGGAATCGCAGTGGCGGATGCAACTGATGCTGCAAGGAGTGCCTCAGATATTGTTTTGACTGAGCCTGGGCTTAGTGTGATTGTGAGTGCTGTGCTTACAAGCAGGGCTATCTTCCAGAGGATGAAGAACTACACCATCTATGCTGTTTCCATTACCATCCGTATTGTGTTTGGATTCATGCTTGTGGCTCTCATCTGGAAGTTTGATTTCTCACCTTTCATGGTGCTAGTAATTGCCATCTTGAACGATGGAACCATCATGACCATCTCCAAGGATAGGGTGAAGCCATCTCCTCTCCCTGACTCATGGAAGCTCAGGGAAATCTTCGCCACCGGTATTGTCCTTGGACTATACATGGCTGTCACCACTGCCTTGTTCTTCTACCTCGTCCATGACACCAACTTCTTCACCAATATCTTCAATGTTGAGTCACTTCAGGATAGTGAGGAGCAACTGAACTCAGCTCTGTACCTTCAAGTGAGTATCATTAGCCAAGCACTCATCTTCGTGACAAGGTCAAGAGGCTGGTCCTATGCTGAACGCCCTGGATTGTTGCTTGTTGTAGCCTTCATTGCAGCACAGCTGGTGGCAACTTTGATTGGTGTGTATGCACACTGGGATTTCGCCAGAATACACGGAATCGGGTGGAGATGGGCAGGAGTGATCTGGATATTCAGCATTGTGACATACATTCCTCTTGATCTTCTAAAGTTCTTGACAAGGTTGGGGCTGTCAGGAAGGGCATGGGGGGATATGATTGACAAGAAGACTGCATTCACAACAAAGAAGGATTATGGAAAAGGAGAGAGGGAAGCACAATGGGTTAAGGCTCAGAGGTCAATGCATGGACTCCAGGTTTCAGAGAGCCCAAGAGGGTCAGCAGCCAACGGAAGTGAGCAGTCTGAAATAGCTGAGCAGGCAAGGAGACGTGCTGAGGCTGCAAGACTGAGAGATCTGCACACTCTCAAGGGCCATGTTCAATCTGTAGCCAAGTTGAAGGGTCTTGATATTGATACCAACCAACAACATTACACGCTTTAA 1956 0.479 MAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKDLIEVFPSNVDRDTLVLYAARASRVENQDAIDASIVGMLSDPKEARAGITEVHFLPFNPVEKRTANTYIDSNGDWHRSSKGAPEQIIELCNLKGETLKKAHKIIDDFANRGLRALGVARQTVSAKCKESEGEPWELLGLLPLFDPPRHDSAETIRRALDLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGASKDPSIASIPIDELIEKADGFAGVFPEHKYEIVKRLQDKKHIVGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLVALIWKFDFSPFMVLVIAILNDGTIMTISKDRVKPSPLPDSWKLREIFATGIVLGLYMAVTTALFFYLVHDTNFFTNIFNVESLQDSEEQLNSALYLQVSIISQALIFVTRSRGWSYAERPGLLLVVAFIAAQLVATLIGVYAHWDFARIHGIGWRWAGVIWIFSIVTYIPLDLLKFLTRLGLSGRAWGDMIDKKTAFTTKKDYGKGEREAQWVKAQRSMHGLQVSESPRGSAANGSEQSEIAEQARRRAEAARLRDLHTLKGHVQSVAKLKGLDIDTNQQHYTL 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181279g00023 651 PANTHER CALCIUM-TRANSPORTING ATPASE 1 584 - -
Stsc181279g00023 651 FunFam ATPase 4 plasma membrane-type 277 517 - -
Stsc181279g00023 651 Gene3D - 1 517 - -
Stsc181279g00023 651 MobiDBLite consensus disorder prediction 585 612 - -
Stsc181279g00023 651 MobiDBLite consensus disorder prediction 585 607 - -
Stsc181279g00023 651 PRINTS H+-transporting ATPase (proton pump) signature 147 165 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc181279g00023 651 PRINTS H+-transporting ATPase (proton pump) signature 321 346 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc181279g00023 651 PRINTS H+-transporting ATPase (proton pump) signature 290 306 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc181279g00023 651 PRINTS H+-transporting ATPase (proton pump) signature 262 278 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc181279g00023 651 PRINTS H+-transporting ATPase (proton pump) signature 462 483 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc181279g00023 651 Gene3D - 28 327 IPR023214 -
Stsc181279g00023 651 FunFam Plasma membrane ATPase 183 338 - -
Stsc181279g00023 651 SFLD p-type atpase 13 342 IPR044492 -
Stsc181279g00023 651 NCBIfam plasma-membrane proton-efflux P-type ATPase 1 508 IPR006534 GO:0008553|GO:0016020|GO:0120029
Stsc181279g00023 651 ProSitePatterns E1-E2 ATPases phosphorylation site. 33 39 IPR018303 -
Stsc181279g00023 651 Pfam haloacid dehalogenase-like hydrolase 27 304 - -
Stsc181279g00023 651 NCBIfam HAD-IC family P-type ATPase 265 376 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc181279g00023 651 Gene3D - 43 190 IPR023299 GO:0000166
Stsc181279g00023 651 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 547 IPR023298 -
Stsc181279g00023 651 Gene3D - 602 651 - -
Stsc181279g00023 651 PRINTS P-type cation-transporting ATPase superfamily signature 290 309 - -
Stsc181279g00023 651 PRINTS P-type cation-transporting ATPase superfamily signature 313 325 - -
Stsc181279g00023 651 PRINTS P-type cation-transporting ATPase superfamily signature 207 217 - -
Stsc181279g00023 651 PRINTS P-type cation-transporting ATPase superfamily signature 31 45 - -
Stsc181279g00023 651 PRINTS P-type cation-transporting ATPase superfamily signature 185 196 - -
Stsc181279g00023 651 FunFam Plasma membrane ATPase 43 190 - -
Stsc181279g00023 651 SFLD Haloacid Dehalogenase 13 342 - -
Stsc181279g00023 651 SUPERFAMILY HAD-like 27 337 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181279g00023 Stsc-Chr181279 111769 114271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181279g00023 1 651 Primary Pumps ATPases AT3G42640 81.567 0.0 1107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181279g00023 K01535 - gmx:100798717 1073.54