Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181279g00018 ATGTCGGGTTGGGACGAAGGAGGCGTCTACTACAGCGACCAAGCTCACTCATGGCACGACGGCAACCGCCCCGGAGATCCCGACTCCACCGCGTCGAACCACACCATCCAACAGAAATTCAAGGAGTTCATCCGCAACTTCAGTAAGAATGGTCTCTTCCCTTACAGACAAAACCTCCTTGACAACCCTAAGTTTCTCCTTGTTAGATTGGAAGACCTCGACGAATTCGCTCCCGAACTCTCCCCTAAGCTCGAGTCTTCCCCTTCTGATTTCTTGCCCTTGTTTGAAAGCGCCGCCGCGCAGGTTTTGGGGAGTTTGAAGACGAAGGTCACTGGGGACAATGGAGAGCTGGAAGATCAGGTTGCCGGCGATGTTCAGATTCTCCTTACTTCCGAGAAGGATCCTGTATCCATGAGGTCGCTCGGGGCACAAAACATATCAAAGCTTGTTAAAATTGCTGGGATTACTATTGCCGCATCGAGGACTAAGGCGAAGGCAACGTATGTTACGTTAGTATGTAAGAACTGCAAGAAAGGGAAGGAAATTCCGTGCAGGCCAGGACTTGGGGGAGCAGTTGTTCCTCGATCATGTGATCATATCCCTCAGACTGGAGAAGAACCATGCCCAATTGACCCATGGATTGTGGTTCCTGACAAGAGCAAGTATGTTGATCAACAAACATTGAAACTGCAAGAGAACCCAGAGGATGTTCCAACCGGTGAGCTACCTAGAAACCTGCTCCTCTCTGTTGATCGTCATCTAGTTCAAACAGTGGTTCCTGGCTCAAGATTGACAGTGACTGGAATCTTTAGTATTTTCCAAGCGTCCAACTCTGGATCTAACAAAGGGGCAGTGGCAGTTAGACAGCCATATATTAGGGTTGTTGGAATAGAAGACACAAATGAAGCCAAGTCTGGTGGTCCTTCTGCATTTACACCAGAAGAGATAGAAGAATTCAAAAAGTTTGCAGCTGAACCTGATGCATATAAAAATATATGCTCCAAGATTGCTCCCTCGATATTTGGGCATGATGACGTCAAGAAGGCCGTGGCCTGTCTTCTTTTTGGTGGTTCAAGAAAGAATTTACCAGATGGAGTGAAGTTAAGAGGTGATATCAATGTGTTGCTTCTTGGGGATCCATCTACAGCAAAATCACAGTTTCTGAAGTTTGTTGAGAAGACTGCTCCTATTGCTGTCTATACTTCCGGGAAAGGCTCATCAGCTGCTGGTCTCACAGCTTCTGTAATCAGAGATACGAGCACTCGTGAGTTTTACCTTGAAGGAGGGGCTATGGTCTTGGCAGATGGAGGCGTTGTCTGCATTGACGAATTTGACAAGATGAGACCAGAAGATAGGGTTGCCATCCATGAAGCCATGGAACAGCAAACTATATCCATAGCCAAAGCAGGAATAACTACAGTTCTTAATTCTAGGGCTTCCGTTCTTGCTGCTGCTAATCCTCCATCAGGACGTTATGATGATCTTAAGACTGCACAGGATAACATTGATTTGCAGACAACTATTCTTTCTAGGTTTGATTTAATCTTTATCGTGAAAGACATCAGAATGTACAGTCAAGACAAGATCATAGCTAGTCATGTCATAAAGGTTCATGCATCGGCTGGTGCAACCACTAGTGAGAACAGGGTTTCTAAAGAAGAAAATTGGCTGAAGAGGTATTTACACTATTGTCGGACTGAATGCCACCCTCGTCTATCAGAATCTGCTGCAACATTACTGCAGAACAATTATGTGAAAATCAGACAGGATATGAGGCAGCAAGCCAATGAAACTGGAGAAGCTGCTGCAATACCAATTACAGTAAGGCAGCTGGAAGCTATTGTTAGGTTGAGTGAGGCACTTGCCAAAATGAAGCTATCTCATATTGCTACTGAGGAGCATGTGCAAGAAGCAGTAAGGCTTTTCACCGTGTCTACTATGGATGCTGCTAGGTCTGGAATACACCAACAAATCAGTCTCACACCAGAAATGGCAAATGAAATAAAGCAAGCAGAAACTCAGATAAAGAGAAGAATTGGGATTGGAAACCACATATCGGAAAGGAGGCTTATTGATGACCTCAGCAGAATGGGAATGAATGAATCCATTGTGAGAAGAGCTCTTGTGATCATGCACCAGAGAGACGAAGTGGAATACAAGCGAGAAAGGCGTGTTATATGTAGGAAAGCATGA 2193 0.4523 MSGWDEGGVYYSDQAHSWHDGNRPGDPDSTASNHTIQQKFKEFIRNFSKNGLFPYRQNLLDNPKFLLVRLEDLDEFAPELSPKLESSPSDFLPLFESAAAQVLGSLKTKVTGDNGELEDQVAGDVQILLTSEKDPVSMRSLGAQNISKLVKIAGITIAASRTKAKATYVTLVCKNCKKGKEIPCRPGLGGAVVPRSCDHIPQTGEEPCPIDPWIVVPDKSKYVDQQTLKLQENPEDVPTGELPRNLLLSVDRHLVQTVVPGSRLTVTGIFSIFQASNSGSNKGAVAVRQPYIRVVGIEDTNEAKSGGPSAFTPEEIEEFKKFAAEPDAYKNICSKIAPSIFGHDDVKKAVACLLFGGSRKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDTSTREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRASVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDKIIASHVIKVHASAGATTSENRVSKEENWLKRYLHYCRTECHPRLSESAATLLQNNYVKIRQDMRQQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSHIATEEHVQEAVRLFTVSTMDAARSGIHQQISLTPEMANEIKQAETQIKRRIGIGNHISERRLIDDLSRMGMNESIVRRALVIMHQRDEVEYKRERRVICRKA 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181279g00018 730 Pfam MCM N-terminal domain 37 126 IPR027925 -
Stsc181279g00018 730 CDD MCM5 331 645 - -
Stsc181279g00018 730 Pfam MCM P-loop domain 316 538 IPR001208 GO:0003677|GO:0005524|GO:0032508
Stsc181279g00018 730 Gene3D - 309 665 IPR027417 -
Stsc181279g00018 730 FunFam DNA helicase 165 223 - -
Stsc181279g00018 730 Gene3D - 138 273 IPR012340 -
Stsc181279g00018 730 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 165 177 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Stsc181279g00018 730 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 288 300 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Stsc181279g00018 730 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 564 579 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Stsc181279g00018 730 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 139 154 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Stsc181279g00018 730 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 640 657 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Stsc181279g00018 730 FunFam DNA helicase 309 660 - -
Stsc181279g00018 730 ProSitePatterns MCM family signature. 437 445 IPR018525 GO:0003677|GO:0005524|GO:0006260
Stsc181279g00018 730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 646 IPR027417 -
Stsc181279g00018 730 Pfam MCM OB domain 138 273 IPR033762 -
Stsc181279g00018 730 Gene3D - 165 223 - -
Stsc181279g00018 730 SUPERFAMILY Nucleic acid-binding proteins 39 294 IPR012340 -
Stsc181279g00018 730 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 31 688 IPR031327 GO:0003677|GO:0005524|GO:0032508
Stsc181279g00018 730 FunFam DNA helicase 31 118 - -
Stsc181279g00018 730 Gene3D - 31 121 - -
Stsc181279g00018 730 Pfam MCM AAA-lid domain 556 645 IPR041562 -
Stsc181279g00018 730 ProSiteProfiles MCM family domain profile. 328 534 IPR001208 GO:0003677|GO:0005524|GO:0032508
Stsc181279g00018 730 PRINTS Mini-chromosome maintenance (MCM) protein family signature 369 384 IPR001208 GO:0003677|GO:0005524|GO:0032508
Stsc181279g00018 730 PRINTS Mini-chromosome maintenance (MCM) protein family signature 457 470 IPR001208 GO:0003677|GO:0005524|GO:0032508
Stsc181279g00018 730 PRINTS Mini-chromosome maintenance (MCM) protein family signature 508 516 IPR001208 GO:0003677|GO:0005524|GO:0032508
Stsc181279g00018 730 PRINTS Mini-chromosome maintenance (MCM) protein family signature 429 443 IPR001208 GO:0003677|GO:0005524|GO:0032508
Stsc181279g00018 730 PRINTS Mini-chromosome maintenance (MCM) protein family signature 481 493 IPR001208 GO:0003677|GO:0005524|GO:0032508
Stsc181279g00018 730 SMART mcm 134 647 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181279g00018 Stsc-Chr181279 91229 96527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181279g00018 1 730 Core DNA Replication Machinery Family AT2G07690 76.639 0.0 1146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181279g00018 K02209 - gmx:100779483 1240.33